Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00896 ATGTCATTCAAAAGCATAGTAAGGGAACTCAAGGAGATGAGAGATGGGATTGGTAGCACATCAAGGCGAGGTGCAGGAAGCAGAAGCAGGCATTGGCACAGTCGGGCAAAGTCACACATTGTTCCTGATATCACTCTAACTCCAATTGAACCTATTCAGCAGGGACAATGGGCAAATCTACCATCTGAATTGCTTCTGGACATAGTCAGGAGGGTTGAAGAGAGTGAGACGTCTTGGCCTGCACGAGCTGTAGTTGTTTCTTGTGCTTCAGTATGTAAATCATGGCGAGCCGTTACAAAAGAGATAGTCAAGACTCCTGAACAATGTGAGAGGCTCACATTTCCTATCTCATTAAAGCAGCCGGGTCCTCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACATATTTATTGTACTTTGGACTGGTGCCATCGGAGAATGAGAATGATAAGCTCTTATTAGCTGCCAAAAAGATAAGAAGGGCAACAGGCACGGACTTTATTATATCTTTGGTTGCAGATGATTTTTCTCGGTCCAGCAACACATACGTTGGTAAACTCAGGTCTAATTTTTTGGGTACAAAGTTTACTGTATATGACAGCCAACCTCCACATGGAGCTGAAATTCAATCAAACAGTCGGTCTAGTAGGAGATTTCATTCTAAGCAGGTGTCTCCAAGAGTTCCAGCATGTAACTATGTTTTTAGCACCATTGCCTATGAGCTGAATGTTCTCCGCACAAGAGGCCCAAGAAGAATGCACTGCACCATGAATTCCATACCTATCTCAGCCATTCAGGAAGGGGGCAATGCTCCAACTCCTACGTCTTTTCCTGAAACCATTGATGAACATTTTTCTCCCTCACCAGCAGTGAAAGGAAAAGATCCAATTGGTGATTTAAACAATGCAACCCTCCAAGAGCTACCAGTACAGAGCCAAGGCCCATTTGAGCCTTTGGTACTTAAAAACAAGGCTCCCAGATGGCATGAGCAGTTGCAATGCTGGTGCCTAAACTTCAAGGGTCGTGTTACAGTGGCTTCTGTTAAGAACTTTCAACTTGTGGCTGCTGTTGATCCATCTCATAATGTTTCTGCTGCAGAGCAAGAAAAAGTAATCTTGCAGTTTGGAAAGATTGGGAAAGACATATTTACCATGGATTACCGATATCCACTCTCTGCCTTCCAAGCCTTTGCCATATGCTTGAGCAGCTTTGATACGAAACCAGCCTGTGAATGA 1251 0.4388 MSFKSIVRELKEMRDGIGSTSRRGAGSRSRHWHSRAKSHIVPDITLTPIEPIQQGQWANLPSELLLDIVRRVEESETSWPARAVVVSCASVCKSWRAVTKEIVKTPEQCERLTFPISLKQPGPRDSPIQCFIRRNRETSTYLLYFGLVPSENENDKLLLAAKKIRRATGTDFIISLVADDFSRSSNTYVGKLRSNFLGTKFTVYDSQPPHGAEIQSNSRSSRRFHSKQVSPRVPACNYVFSTIAYELNVLRTRGPRRMHCTMNSIPISAIQEGGNAPTPTSFPETIDEHFSPSPAVKGKDPIGDLNNATLQELPVQSQGPFEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00896 416 PRINTS Tubby superfamily signature 172 188 IPR000007 -
Seca10g00896 416 PRINTS Tubby superfamily signature 188 212 IPR000007 -
Seca10g00896 416 PRINTS Tubby superfamily signature 373 392 IPR000007 -
Seca10g00896 416 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Seca10g00896 416 PRINTS Tubby superfamily signature 394 416 IPR000007 -
Seca10g00896 416 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Seca10g00896 416 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Seca10g00896 416 PANTHER TUBBY-RELATED 49 414 - -
Seca10g00896 416 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Seca10g00896 416 ProSitePatterns Tub family signature 2. 401 416 IPR018066 -
Seca10g00896 416 SUPERFAMILY Tubby C-terminal domain-like 106 416 IPR025659 -
Seca10g00896 416 Gene3D - 50 105 - -
Seca10g00896 416 SUPERFAMILY F-box domain 52 101 IPR036047 GO:0005515
Seca10g00896 416 MobiDBLite consensus disorder prediction 207 227 - -
Seca10g00896 416 Pfam Tub family 118 411 IPR000007 -
Seca10g00896 416 FunFam Tubby-like F-box protein 114 416 - -
Seca10g00896 416 MobiDBLite consensus disorder prediction 15 36 - -
Seca10g00896 416 CDD F-box_AtTLP-like 57 101 - -
Seca10g00896 416 MobiDBLite consensus disorder prediction 209 224 - -
Seca10g00896 416 Gene3D Tubby Protein; Chain A 114 416 IPR025659 -
Seca10g00896 416 Pfam F-box domain 57 104 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00896 Seca-Chr10 8579109 8581581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00896 1 416 TUB Transcription Factor Family AT2G18280 64.269 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Seca10g00896 Tub 5.3e-109 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00896 K19600 - gmx:100778290 721.079