Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00894 ATGACACTCCTCTTAATGAAAACCGATAGTGGTGAAGAAGCGGATACGTTACCGAATCCCCGAACCTTTGAGGTACATAGTAAAATGTGTATAGAGCTCATGAGATTAGTAGACAGTATCTCACGGATACTTCCTGACATAGAGAGAGCACGGCCACGAAGCTCATTGGGAATAGAGTCTCTGTGTCTGCTGAATAACGCAATTGATAAAGCCAAGCTACTTCTGCAACATTGCTCCGAAAGCAGCAAACTCTACCTGGCTGTGACTGGGGATACAGTACTCTCAAGATGCCAAAAGGCAACAAGGTCAATAGAGCAAAGCTTAGTCCCCATTCAGGGTATGGTTCCAGTTATGCTGGCTGTAGAGGTTTCTAGAATAATTGATGATCTTGAGTGTGCTACATTTGTTCTGGACCCTGCTGAAGAAGATGCTGGGAGGGCTGTGAAAGAGTTGCTTCAGCAAGGTACTTCAACCTCAGATTCAGTGGATGATTCTGAAGTTAAAGCTCTTCAGTTTGCAGCACCAAGACTGAATATAACATCCCGAAAGGCCATCATAATAGAGAGTCGATCTATCAAGAAGTTGCTTGATAAAGTTGGACCAAATGACCAGAAAAAGAAGATGATATTGAGGTATCTTCTGTATCTACTGAAAAAGCATGGAAACTCCATCGTGGGAGAACAAATGGAGGTCTATTCTCGTAGTGAAGAACCAATTGCAACCGAGAACTCTGGTCATGATTCTCTAAGAAGCCATCATGTTGAGTCAGACCCTTGCTTGGACTATGGTCATTATAGAACTCACCCCAGTGAGTTTGATAGAGTTACACCCCCTGAGGAATACAAGTGCCCCATATCATCAAGGTTGATGTATGATCCTGTTATCATTGCTTCCGGAGTAACATATGAAAGGATGTGGATAAGAAGGTGGTTTGATGAGGGTAAAACTACATGCCCAAAAACCAACAAGAAATTAGTCCATATGGCAATGACTCCGAATGTTGTCATGAAGGACTTAATATCAAAATGGTGCAGATATAATGGAGTCACCATTCCTGACCCGACTAGGCAAGCAGAAGATTTTAACTCATTGGATGCTTCAATCACTTCCATTAAGAGTTTTGCAAGTTATTTCAATGATTTGAACTTGCCAGTGGATCTTAGTAATATTTCACTTGGGTCATTGGACACTAGTTATAGTTCAGATGCCTCACGTGTTAAGAGCATTGTTAAGACCACTCATGATTCAAACTTGATGTTGATCAAGAGTAGGAACAATTCTCACAAGCATCAAGCACATGCGGAGATACATGATACAGATTTGATGCTCTTGCCTAAACTCCATGATCTTCAATGGGATTCTCAATGCAAGGTCATTGAAGACATGAAAGATCATTTGAAAAGCAATGGCCAAGGTTTTTTCTCTCTGTCATCTGAGAATTTCATTGAACCACTAATCAGATTTCTGAGCAATGCATATGATCGGCATGACATAAAAGCGCTGAGAGCTGGAACTCAGCTTCTATTGGAACTTGTGAACAACTGCAGAGATGGTATGGCTGATTTAGGAGAAGATACATTCATTACATTAGCAAGTTTTCTTGATTCAGAAGTGACTGGAGAAGTTCTTACCATAATGGAAGAACTGTCTGGGTATGGGTATAGCAAAGCTAAGATTGCAGCATCCAGTGCACTCACTTCTGTTTTGAAAATACTTGATTCTGCTAACAAAGGGTTCCAACAACAAACCATTAGAATAATGTACAATTTGTCCTTCAATGGTGAAGTTTGTCCCCACTTGCTATCTCTCAAGTGCATCCCAAAATTGCTACCATTTTTTAAAGAAAGGGCTGTTTTGAGATACTGCATATATATATTGAAAAATCTCTGTGATACTGAAGAGGGTAGGAATTCTGTTGCTGAAACAAAGGGATGCATATCTTGTGTTGCTGAAATACTTGAGACAGGCAGTAATGAGGAACAAGAAAATGCACTGGCTGTTCTAGTATCTTTATGCTCTCAACGTGTGGATTATTGTAAGTTGGTTATGGATGAGGATATTATCACTCCTCTTTTCTTTGTCTCCCAGAATGGAAATGATAAAGGAAAGGCAAGTGCATTGGAACTGCTCCATCTTTTGACAGATACTAAATATGTTGAGAATGAAGTTTGCTCTGAACCAAACACTATCAAGAACACTTCTCGAGATTCCAACAACAGTCACCCTGAAGAAAATAAATCATCAAAGGGTTCTACATTTTTCAAGAAGATATCATGGTTCTCAAATGGCAGTTCACATGCATCAAAAACTAAAAGGTGA 2319 0.4002 MTLLLMKTDSGEEADTLPNPRTFEVHSKMCIELMRLVDSISRILPDIERARPRSSLGIESLCLLNNAIDKAKLLLQHCSESSKLYLAVTGDTVLSRCQKATRSIEQSLVPIQGMVPVMLAVEVSRIIDDLECATFVLDPAEEDAGRAVKELLQQGTSTSDSVDDSEVKALQFAAPRLNITSRKAIIIESRSIKKLLDKVGPNDQKKKMILRYLLYLLKKHGNSIVGEQMEVYSRSEEPIATENSGHDSLRSHHVESDPCLDYGHYRTHPSEFDRVTPPEEYKCPISSRLMYDPVIIASGVTYERMWIRRWFDEGKTTCPKTNKKLVHMAMTPNVVMKDLISKWCRYNGVTIPDPTRQAEDFNSLDASITSIKSFASYFNDLNLPVDLSNISLGSLDTSYSSDASRVKSIVKTTHDSNLMLIKSRNNSHKHQAHAEIHDTDLMLLPKLHDLQWDSQCKVIEDMKDHLKSNGQGFFSLSSENFIEPLIRFLSNAYDRHDIKALRAGTQLLLELVNNCRDGMADLGEDTFITLASFLDSEVTGEVLTIMEELSGYGYSKAKIAASSALTSVLKILDSANKGFQQQTIRIMYNLSFNGEVCPHLLSLKCIPKLLPFFKERAVLRYCIYILKNLCDTEEGRNSVAETKGCISCVAEILETGSNEEQENALAVLVSLCSQRVDYCKLVMDEDIITPLFFVSQNGNDKGKASALELLHLLTDTKYVENEVCSEPNTIKNTSRDSNNSHPEENKSSKGSTFFKKISWFSNGSSHASKTKR. 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00894 772 MobiDBLite consensus disorder prediction 725 750 - -
Seca10g00894 772 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 347 IPR013083 -
Seca10g00894 772 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Seca10g00894 772 SUPERFAMILY ARM repeat 443 718 IPR016024 -
Seca10g00894 772 Gene3D - 453 729 IPR011989 -
Seca10g00894 772 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Seca10g00894 772 PANTHER U BOX DOMAIN-CONTAINING 30 721 - -
Seca10g00894 772 CDD RING-Ubox_PUB 278 327 IPR045210 -
Seca10g00894 772 SUPERFAMILY RING/U-box 267 354 - -
Seca10g00894 772 Pfam U-box domain 278 345 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00894 Seca-Chr10 8573532 8578119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00894 20 754 U-box Gene Family AT4G36550 38.697 3.19e-152 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00894 - - gmx:100791627 1110.9