Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00889 ATGGAAATGAGAGGCCAAGATAAGGAAATAGAGATGGCAACTAGTTTAGGTTATAATCTTCCCAATAGGGATTCCTCTTCTTCTTCCAAGCTGTCTTCTGGGCAGAGAGGTGCTAGTAGTGATCAACCTCCTCAACCTCACAGTACTCACACATTAATCTTCAATGATCCACCTCAAACTTCACATCATCAACACCATCATCATCTTTATCCACCTACTCCTCTTGCACCCTCTCAACATCACCAATCTCAGAGACCAAGTACCACCACAGATCCAGATCTAAGCTCATCTCCTATTACCCCAAGAACAGCACCACCACCACCACCACAGATTGCAACAACAACCTCAACCCCTTTGGTCAGATACCGAGAATGTCTGAGAAACCACGCGGCAAGCATGGGGAGCCACGTCGTAGATGGATGTGGTGAATTCATGCCAAGTGGAGAAGAAGGCACCCCAGAATCACTAAAGTGTGCTGCTTGTGAGTGTCACCGCAATTTCCATAGAAAAGAGGTTGAAGGGGAACAACCCCAATTACATAATGTTCCCAATTATCACAGTCACAGCTATTATCCCAATCCCAATAAGCATAATAATGGTCACCTTCAGTTTCCTACACCACCATCCTCTTCTCTTTCTCTCCATCACCATAGATTTTCCCATGTGGTTGCTACCCCAACAGCAGGTCCTGTTCCACCCTTGATGATGGCCTTTGGAGGCCCTGCTGAGTCCTCAAGTGAAGATCTAAACATGTTCCAGTGTAACGCGGGAGCACAGTTTTCAGTGCAGGTGCCACCACTTTCCAAGAAGAGGTTCAGGACAAAATTCTCACAGCAGCAGAAGGATAGGATGATGGAGTTTGCTGAGAAGCTGGGGTGGAAGATCCAGAAACATGATGAACAGGAAGTGCAGCAATTTTGTTCCCAAGTGGGTATCAAGAAACAGGTTTTCAAGGTTTGGATGCACAATAACAAACAAGTAATGAAGAAGCAGCAAAATGTAAGCCTATAG 1011 0.456 MEMRGQDKEIEMATSLGYNLPNRDSSSSSKLSSGQRGASSDQPPQPHSTHTLIFNDPPQTSHHQHHHHLYPPTPLAPSQHHQSQRPSTTTDPDLSSSPITPRTAPPPPPQIATTTSTPLVRYRECLRNHAASMGSHVVDGCGEFMPSGEEGTPESLKCAACECHRNFHRKEVEGEQPQLHNVPNYHSHSYYPNPNKHNNGHLQFPTPPSSSLSLHHHRFSHVVATPTAGPVPPLMMAFGGPAESSSEDLNMFQCNAGAQFSVQVPPLSKKRFRTKFSQQQKDRMMEFAEKLGWKIQKHDEQEVQQFCSQVGIKKQVFKVWMHNNKQVMKKQQNVSL. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00889 336 MobiDBLite consensus disorder prediction 1 117 - -
Seca10g00889 336 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 122 171 IPR006456 -
Seca10g00889 336 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 121 172 IPR006456 -
Seca10g00889 336 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 92 326 - -
Seca10g00889 336 MobiDBLite consensus disorder prediction 99 113 - -
Seca10g00889 336 Pfam ZF-HD protein dimerisation region 120 172 IPR006456 -
Seca10g00889 336 MobiDBLite consensus disorder prediction 76 98 - -
Seca10g00889 336 NCBIfam homeobox domain, ZF-HD class 269 326 IPR006455 -
Seca10g00889 336 Gene3D - 260 330 - -
Seca10g00889 336 MobiDBLite consensus disorder prediction 18 59 - -
Seca10g00889 336 SUPERFAMILY Homeodomain-like 262 330 IPR009057 -
Seca10g00889 336 FunFam Zinc-finger homeodomain protein 2 257 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00889 Seca-Chr10 8523023 8524033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00889 67 331 ZF-HD Transcription Factor Family AT2G18350 45.745 3.37e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca10g00889 ZF-HD_dimer 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00889 - - vra:106776405 383.259