Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00883 ATGATGCATCGTTCTTGCAGTGGCTCCCAGGGGCACGTGATGGGACCCTGTACATGTGGTATGTTTCATAGTCATAGCCAACCCAATTCCTTGTCAATGCTATTCTCCATGCCCAACCACAAACCCTATGAATATGATGAATCAGACATGTATTCTTTCACTCCTTCTTCCTCTTCCGTGGACTGCACCCTCTCCCTCGGAACCCCATCCACCCGTTTCACCGAAGATGAAGAGAAGCGTAACCGCCACGAACGTCGCTCGGTATCAAACTTTTGCTGGGATTTACTACAATCCAAACACACCTCTCAATCCCAAACCAAGTCCACCAGAGGAAGCACCAATTCAAACTCCACTAACGATCCTCTCCTCGCTCGTCGCTGCGCTAACTGCGACACCACTTCAACTCCCCTCTGGAGAAACGGCCCACGAGGCCCAAAGTCACTTTGCAATGCCTGTGGGATTAGATTCAAGAAGGAAGAGAGAAGAGCAAGTGCTGCCGCCGCTACACCGGCGGCGGCATCTGGCGGTGTAATGGAATCGTCGCAGATGTATAGTCATCACCACAACAACTCATGGTACGCACAACCGCAGAGTCAGAAGATGCAGTGTTTCTCGCCGGCGATGGGCAATGAGTTCCGGTTCATGGATGACGCCGATCGAGAATCCGAGAACGGCATTCCGTTTCTGTCTTGGAGACGAACAAGCCTTGTTCATGACTATACCAGATGA 729 0.513 MMHRSCSGSQGHVMGPCTCGMFHSHSQPNSLSMLFSMPNHKPYEYDESDMYSFTPSSSSVDCTLSLGTPSTRFTEDEEKRNRHERRSVSNFCWDLLQSKHTSQSQTKSTRGSTNSNSTNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAATPAAASGGVMESSQMYSHHHNNSWYAQPQSQKMQCFSPAMGNEFRFMDDADRESENGIPFLSWRRTSLVHDYTR. 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00883 242 Pfam GATA zinc finger 127 161 IPR000679 GO:0006355|GO:0043565
Seca10g00883 242 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 124 164 - -
Seca10g00883 242 ProSitePatterns GATA-type zinc finger domain. 127 152 IPR000679 GO:0006355|GO:0043565
Seca10g00883 242 CDD ZnF_GATA 126 158 IPR000679 GO:0006355|GO:0043565
Seca10g00883 242 Gene3D - 123 201 IPR013088 GO:0006355|GO:0008270
Seca10g00883 242 SMART GATA_3 121 175 IPR000679 GO:0006355|GO:0043565
Seca10g00883 242 ProSiteProfiles GATA-type zinc finger domain profile. 121 157 IPR000679 GO:0006355|GO:0043565
Seca10g00883 242 PANTHER GATA TRANSCRIPTION FACTOR 18 11 242 IPR044272 GO:0003700|GO:0009908
Seca10g00883 242 MobiDBLite consensus disorder prediction 102 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00883 Seca-Chr10 8448115 8449750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00883 18 242 C2C2-Gata Transcription Factor Family AT3G50870 43.902 4.31e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca10g00883 GATA 5.8e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00883 - - gmx:100790571 347.821