Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00872 ATGGAGGCGAATAACAAAGTGAAGAACGAAGATCCTGCAGCAGAGTCTCCAACATCGGTTCTAGAAGACGAGGATGTCTGCGGCAAGAACGGGGAAATTAAGTCGGAGGAAGAGGTGCTTGCAGATATTAGGGATGATGGGTCCTCCTTTATATCAAGTTCGATGGCAGAGGAGGAAGAGAAGTTGCTCGAAGCTCGGGTCAAGGAAGAGGAGGCTCAGCCTGAGGATGCACCTGTCCTCAATGAGACACAGTTTGACAAACTGGATGAGCTTTTAACGCAAACCAAACTGTACTCTGAGTTTCTTTTGGAGAAAATGGATGACATCACGCTTACTGGGGGTGAACAAGAGGATGAGGTTGAGGAAGAGAGCAAACCAGCTGCTAAAAAGAAGGGCCGTGGATCCAAAAGAAAAAAAGCTTCACAGTGCAATACTGGGAAGGCCAAAAGGGCAGTTGCAGCCATGCTTACAAGATCTAAAGAAAATGAGAGGACTGAAGATATGAACATGAGTGAGGAAGAAAGAATGGAGAAAGAACAGAAGGAGCTTATGCCTTTACTGACAGGTGGAAAATTGAAGTCTTATCAACTGAAGGGAGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACAATTGGGTTTATCTCACATCTGAAAGGGAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTATCAACCCTCTCAAACTGGGTGAATGAGATTTCTAGGTTTGCCCCATCACTCCCTGCTATTATCTACCATGGTAACAAGAAACAGAGAGATGAGATCCGAAGGCAACATATGCCTAGAACAATTGGCCCAAAATTTCCCATAGTAATAACTTCTTATGAGGTTGCTTTAAATGATGCTAGGAAAGGATTGAGTTCATACCATTGGAAATATCTTGTTGTTGATGAGGGTCACAGACTCAAAAACTCAAAATGCTTATTGGTGAAGAGATTGAAATACATGAAAGTAGAAAATAAGCTGCTGCTAACTGGGACACCTCTTCAGAATAACTTGGCGGAGCTGTGGTCATTGTTGAACTTCATTTTACCTGATATCTTCTCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGCAATAATGGAACATCGAAGGAAGAGTTGGCAGAGAAAAGAAGAACCCAAGTGGTAGCAAAGCTTCATGCAATTCTTCGGCCCTTTCTTTTGCGTAGGATGAAGTCTGATGTTGAGCTGATGTTGCCACGGAAAAAGGAGATAATTATCTATGCTAACATGACTGAGCATCAGAAGAATTTGCAGGATCATTTAATTAATGCATCATTGGGGAAATATTTAACAGAAAAACTGTCTGTTGCATCTGTTGCAATAAAAATTCATAATTTGGTCATTCAACTAAGGAAGGTCTGCAACCATCCTGACCTCTTAGAGTCAGCCTTTGATGGTTCATATTTTTATCCTCCTGTAAATGATATAATTGAACAATGCGGAAAGTTCCAATTGCTTGACCGATTGTTAGAACGGTTATTCGCACGGAATCACAAAGTTCTGATCTTCAGTCAGTGGACTAAAGTGTTAGATATAATGGATTATTATTTTAGTGAAAAGGGCCTTGAAGTTTGCAGGATTGATGGTGCAGTGAAACTGGATGAAAGGAAACGGCAGCAGATCCAGGAATTCAATGATGAAAACAGCAATTGCAGAATCTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATTAACCTCACTGCTGCTGACACTTGCATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTACAAGCCATGGATAGATGCCATAGAATAGGTCAAACAAAGCCTGTTCATGTTTACAGGCTTGCAACTGCTCAATCTGTAGAGGGTCGCATGTTAAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGAGAAAGGACAGTTTCATCAAGAACGTGCAAAGCCTGCCAGTATGGATGAATTGGAGGAAGAGGATATTTTGGCAATGCTTCGAGGAGAAGACGAAACAGATGAAGACAAAATTATACAAATAGGTATTAGTGATGAAGACCTGGAGAAGATCTTGGATCGCAGTGATCTTGTTGTCAATAGCTCAAACGCTCCGGAAAGTACCTTTCCCCTTAAAGGGCCTGGGTGGGAGGTGGTGATTCCATCTGCGTCTGGGGGCATGCTTTCTACCCTTAACAGCTAA 2274 0.4191 MEANNKVKNEDPAAESPTSVLEDEDVCGKNGEIKSEEEVLADIRDDGSSFISSSMAEEEEKLLEARVKEEEAQPEDAPVLNETQFDKLDELLTQTKLYSEFLLEKMDDITLTGGEQEDEVEEESKPAAKKKGRGSKRKKASQCNTGKAKRAVAAMLTRSKENERTEDMNMSEEERMEKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFISHLKGKGLDGPYMIIAPLSTLSNWVNEISRFAPSLPAIIYHGNKKQRDEIRRQHMPRTIGPKFPIVITSYEVALNDARKGLSSYHWKYLVVDEGHRLKNSKCLLVKRLKYMKVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCNNGTSKEELAEKRRTQVVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEHQKNLQDHLINASLGKYLTEKLSVASVAIKIHNLVIQLRKVCNHPDLLESAFDGSYFYPPVNDIIEQCGKFQLLDRLLERLFARNHKVLIFSQWTKVLDIMDYYFSEKGLEVCRIDGAVKLDERKRQQIQEFNDENSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERAKPASMDELEEEDILAMLRGEDETDEDKIIQIGISDEDLEKILDRSDLVVNSSNAPESTFPLKGPGWEVVIPSASGGMLSTLNS. 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00872 757 MobiDBLite consensus disorder prediction 130 144 - -
Seca10g00872 757 Coils Coil 162 182 - -
Seca10g00872 757 PANTHER SNF2/RAD54 HELICASE FAMILY 47 701 - -
Seca10g00872 757 Coils Coil 53 73 - -
Seca10g00872 757 SMART ultradead3 188 383 IPR014001 -
Seca10g00872 757 MobiDBLite consensus disorder prediction 57 75 - -
Seca10g00872 757 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 372 IPR014001 -
Seca10g00872 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 422 IPR027417 -
Seca10g00872 757 Gene3D - 428 731 IPR027417 -
Seca10g00872 757 Pfam SNF2-related domain 195 492 IPR000330 GO:0005524|GO:0140658
Seca10g00872 757 FunFam ATP-dependent DNA helicase DDM1 186 431 - -
Seca10g00872 757 Gene3D - 193 423 IPR038718 -
Seca10g00872 757 SMART helicmild6 544 629 IPR001650 -
Seca10g00872 757 MobiDBLite consensus disorder prediction 1 33 - -
Seca10g00872 757 MobiDBLite consensus disorder prediction 113 147 - -
Seca10g00872 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 720 IPR027417 -
Seca10g00872 757 FunFam Chromatin complex subunit A 106 432 660 - -
Seca10g00872 757 MobiDBLite consensus disorder prediction 50 82 - -
Seca10g00872 757 Pfam Helicase conserved C-terminal domain 517 629 IPR001650 -
Seca10g00872 757 CDD SF2_C_SNF 504 639 - -
Seca10g00872 757 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 518 675 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00872 Seca-Chr10 8343291 8349003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00872 162 650 RAD5 or RAD16-like Gene Family AT3G16600 24.538 7.70e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca10g00872 SNF2_N 1.7e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00872 K19001 - gmx:100777687 1233.01