Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00869 ATGTTATTTGGATGTTGTTCTTATATCTGCTTGTATGCAGATGATCCACATAATGACCCAAATGTATCCGGAGATCCATACAAGACATTGTTTGTGGCCAAACTCAGTTATGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAAAGGGTTCGATTAGTTACTGACAAAGAGACAAATAAGCCCAGGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGATGGTCGAAGGGTGCTTGTGGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGACCTCGACGCCTAGGCGGTGGGCTTGGTACTACCAGAGTTGGGGGTGAAGAAGTTAATCAGCGACATTCTGGGAGGGAACAACAACAGTCTCGATCTGAAGAACCAAGAGTGCGGGAGGATCGACATGGTGATCGGGACAGAGAAATATCACGTGAAAGAGGTAGAGACAGAGATAGAGAACGGGAGAAATCACGGGAACATTCTCATGAAAGGGTCAGGGATCGTGATCATAGAGAGGATAGGCACCACAGAGACCGAGATAGGACTAGGGACAGAGACAGAGACAGGGAAAGAGAGAGAGATAGAGGGCGGGATCGGGAAAGAGGACGTGACCGAGACCGGGATAGAGACCGTGACCGTGAGCGAGAGAGGGACCGTGATCGGGATCGGGATCGAGACCATGATCGTCATCGTGAAAGGGATAGAGATTATGAAGTTGGGGATACTGATAGAGGACGCTCACGTGATAGGGAGTCTGATTATGACCGTGTCGAATCTAAACAGGAGAGGGACCGGCATGGTGAAAGGGATCGTGACTATGAGCCTGAAGATGATCGTGGATGGTATAACCAATCTGAGCGTGGACATAGGCATGCGGACCCTGATCATGACTCTGAGCAATATGACCACTATGAGCATCATGGAGGACGAGGGCAGTATGATCATGGAGATGATCATTACAATCAATACCCTGACCATGATAGGATGGATGGTGACTACCATACAGGACGTGCAACATCTGAATCACGTGAAAAGGAAAGAAATCGTGATGTGGATCGTGATTCTCGTCCCTCAGAGAGATCTCATTCCCGGGAGTATGATTACTAG 1167 0.4756 MLFGCCSYICLYADDPHNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSRSEEPRVREDRHGDRDREISRERGRDRDREREKSREHSHERVRDRDHREDRHHRDRDRTRDRDRDRERERDRGRDRERGRDRDRDRDRDRERERDRDRDRDRDHDRHRERDRDYEVGDTDRGRSRDRESDYDRVESKQERDRHGERDRDYEPEDDRGWYNQSERGHRHADPDHDSEQYDHYEHHGGRGQYDHGDDHYNQYPDHDRMDGDYHTGRATSESREKERNRDVDRDSRPSERSHSREYDY. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00869 388 Gene3D - 15 140 IPR012677 -
Seca10g00869 388 FunFam U1 small nuclear ribonucleoprotein 70 kDa 15 140 - -
Seca10g00869 388 MobiDBLite consensus disorder prediction 131 388 - -
Seca10g00869 388 MobiDBLite consensus disorder prediction 110 388 - -
Seca10g00869 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Seca10g00869 388 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 12 230 - -
Seca10g00869 388 CDD RRM_snRNP70 27 117 IPR034143 GO:0030619
Seca10g00869 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 99 IPR000504 GO:0003723
Seca10g00869 388 SMART rrm1_1 29 102 IPR000504 GO:0003723
Seca10g00869 388 SUPERFAMILY RNA-binding domain, RBD 15 128 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00869 Seca-Chr10 8312505 8317701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00869 30 76 C2H2 Transcription Factor Family AT2G19380 38.298 3.25e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00869 K11093 - gmx:100800903 268.855