Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00868 ATGGAAGCCTCAAGGATGTTACTATTCTCCCCAATTTCGAGCCCAAATATACGCATGAACCATTTGAATCACTCATCATCAGTTAGAAGGCAAAGGTCTCATATGCCACTCAAGATAGTGGGCATGGCAAAAGAGGGCAGCGACACTAGCAACAGCGGCATCATAGAGAAAGCAGCCATAGCCGGTGGATTAATCTCAACCCCAGTGATTGCTTGGTCTCTCTACACCCTCAAAACTACCGGCTGTGGCTTGCCCCCAGGTCCAGGTGGGTCAATTGGTGCATTGGAGGGAGTGAGCTACCTCGTAGTTGTGGGAATAGTGGCTTGGTCCTTGTACACTAAAACCAAAACTGGTTCGGGACTTCCTAACGGTCCTTTCGGGTTGTTGGGTGCTGTTGAAGGCCTGTCCTACTTGGCATTGGTTGCCATTGTGGTTGTCTTTGGGTTGCAGTACCTTGATCAGGGTTACATTCCAGGTCCTCTCCCTGCTGATCACCCTCCATCACCCAATTCGCAGTCACCTCCTCCTCCAGTGTCTGGGTCGGGCCATTCTCCACCCACATCTGGCTCCAGCTCTGGCTCTGGCTCTGGCTCTGGATCACCCTCACCTCCACACAAATCATTACCAACACAATCATCCTCTGAAAACTCTAATAACAACAATGATGGTAACAACAACGGTGGAGATGATAACAGTAAGGCAATAATTGGAGCAGTGCTTGGTGTAGGCAGCGTTCTTCTCATTTTGGTCATCGTTTGTGTTGTCTGCGCGAGGAAGAAGAAAAAAAAGCAAATGTACTATTATGGTCCTGGAGGCCTTGCTCTTGGCCTCAAAGGGGGTACCTTCAGTTATGAGGAATTGGCAAGTGCCACAGAAGGGTTTACTGATGCTAATTTGATAGGACAGGGTGGCTTTGGTTATGTCCATAAGGGTGTATTGCCTACTGGAAAGGAAGTGGCAGTTAAGAGTTTGAAATCAGGTAGTGGGCAAGGAGAACGAGAGTTCCAAGCTGAGATTGACATCATTAGCCGTGTTCATCATCGCCATCTTGTGTCACTTGTTGGATACTGTATTGCCGGTGGGCAGAGAATGCTGGTCTATGAATTTATTCCCAATAACACTTTAGAATATCACCTTCATGGAAAGGGTAGACCTACCATGGACTGGCCTACTAGAATGCGGATTGCAATAGGCTCTGCTAAAGGGCTTGCCTATCTGCATGAAGACTGCCATCCTCGTATAATTCATCGTGATATTAAAGCTGCGAATGTTCTTATTGATGACAGCTTCGAAGCAAAGGTTGCTGATTTTGGATTGGCTAAATTGACTACTGATAATAATACTCATGTATCAACTCGTGTCATGGGAACTTTCGGGTATCTAGCCCCTGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCTGACGTTTTCTCATTTGGGGTCATGCTTTTGGAACTCATTACTGGGAAGCGACCTGTGGATGTCTCAAATGCTATGGATGACAGTTTAGTGGACTGGGCTCGACCATTACTAACTCGTGGATTGGAGGAGGATGGCAACTTTGGAGAGTTGGTGGATCTATTTTTGGAGGGAAACTACAATCCTCAAGAATTGACAAGGATGGCCGCATGCGCTGCTGCTAGCATTCGTCATTCCGCCAAGAAGCGTCCTAAAATGAGTCAGATTGTAAGAACATTGGAAGGTGATGTCTCACTGGATGACTTGAAGGAGACGATGAATAAGCCCGGGCATAGCACTATTTACAACACTTCATCTGGGAGCTCAGAGTATGATACAATGCAATACAATGCTGATTTGCAGAAGTTCAGAAAAGCAGTGTTTTCTAGCCAGGAATTTGGCACCAGCAGCTGCTCTAGTGGCGATATGAGCCAAACCACGCAGAAACAACCACATTTGCTTTAG 1926 0.4652 MEASRMLLFSPISSPNIRMNHLNHSSSVRRQRSHMPLKIVGMAKEGSDTSNSGIIEKAAIAGGLISTPVIAWSLYTLKTTGCGLPPGPGGSIGALEGVSYLVVVGIVAWSLYTKTKTGSGLPNGPFGLLGAVEGLSYLALVAIVVVFGLQYLDQGYIPGPLPADHPPSPNSQSPPPPVSGSGHSPPTSGSSSGSGSGSGSPSPPHKSLPTQSSSENSNNNNDGNNNGGDDNSKAIIGAVLGVGSVLLILVIVCVVCARKKKKKQMYYYGPGGLALGLKGGTFSYEELASATEGFTDANLIGQGGFGYVHKGVLPTGKEVAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCIAGGQRMLVYEFIPNNTLEYHLHGKGRPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDVSNAMDDSLVDWARPLLTRGLEEDGNFGELVDLFLEGNYNPQELTRMAACAAASIRHSAKKRPKMSQIVRTLEGDVSLDDLKETMNKPGHSTIYNTSSGSSEYDTMQYNADLQKFRKAVFSSQEFGTSSCSSGDMSQTTQKQPHLL. 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00868 641 MobiDBLite consensus disorder prediction 620 641 - -
Seca10g00868 641 SUPERFAMILY Protein kinase-like (PK-like) 281 567 IPR011009 -
Seca10g00868 641 Gene3D Transferase(Phosphotransferase) domain 1 370 587 - -
Seca10g00868 641 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 241 617 IPR047117 -
Seca10g00868 641 ProSiteProfiles Protein kinase domain profile. 294 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00868 641 MobiDBLite consensus disorder prediction 160 228 - -
Seca10g00868 641 MobiDBLite consensus disorder prediction 183 228 - -
Seca10g00868 641 Pfam Protein tyrosine and serine/threonine kinase 298 504 IPR001245 GO:0004672|GO:0006468
Seca10g00868 641 Gene3D Phosphorylase Kinase; domain 1 260 369 - -
Seca10g00868 641 SMART serkin_6 294 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00868 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Seca10g00868 641 FunFam proline-rich receptor-like protein kinase PERK1 272 369 - -
Seca10g00868 641 FunFam Proline-rich receptor-like protein kinase PERK1 370 578 - -
Seca10g00868 641 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Seca10g00868 641 MobiDBLite consensus disorder prediction 160 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00868 Seca-Chr10 8302293 8309769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00868 270 636 Trihelix Transcription Factor Family AT1G70460 60.163 8.35e-149 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Seca10g00868 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00868 - - gmx:100777163 653.669