Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00858 ATGCCGGTTGATTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGCGTGTCTTCCTCTGGCAATCAGACAGTGCCCCCAAAGGGCACCACCAAGAAGAAGAGAAACCTTCCAGGAATGCCAGATCCAGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTTATGGCCACGAACCGATTCGTGTGTGAAATATGCAACAAGGGTTTTCAGAGGGATCAGAATCTTCAGCTTCATCGACGGGGTCACAATCTGCCATGGAAGCTTAGACAGAGGTCAAGCAATGAGGTGAGGAAGAGGGTGTACGTGTGCCCTGAGCCAACGTGTGTTCATCACGATCCTTCAAGAGCTTTGGGGGATCTAACAGGGATTAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAATACGCAGTTCAATCGGATTGGAAAGCTCACTCCAAGATTTGCGGTACCAGAGAGTACAAATGCGATTGTGGGACTTTGTTTTCAAGGTTTGTTCCCCTCTGTGACCATAACACAGTTTGTACAGCAATTTTTGGAGATTTGGGGAGGGCTTTTTGTGATGCGTTAGCAGAGGAAAGTGCAAGATCTCAGACTCAGCCTGCTTCAAAGGCTAGTCCAGAGTCAGATTCCAAAGTTGTATCTGGCGATTCATCACCTCCTCCTCCTGCGGCAGCGCCGCCGCTGTCACCGCCGCCTCAGGCTCCAGCCCCGCCAGTTTCTTCTCAGTCAAACAGTGTCGTACCATCTGCTTTGCAGACACAAAATCCAGAGTTACCAGAAATTTCACCAAAAATCATAGAGGAACCGGCAGCCAATACTGCTATGAATGGGAGCTGTAGTAGCAGCAGCACTAGCACCGGCTCAACTAGCAATAACAATGGTAGTACTAGCAGCAGTGTATTTGCAAGCTTGTTTGCTTCATCAACTGCATCAGGAACTCTTCAATCCCAAACTCCAGCATTCCCTGACCTAATTACGGCCATGGCGCATCCAGCAGACCTCTCAGGGCCTCCATCTTCTGAGTCCATTTCTCTGTGCCTCGCCACCAATCACGCGTCATCCATTTTTAGAACAGGAGGGAAGGAGCGCCGCCAGTACGCCCCACCACCACAGCCAGCTATGTCCGCCACTGCATTGCTGCAGAAAGCTGCTCAAATGGGTGCAGCTGCAACAAATACCTCACTGCTTTGCAGCTTAGGCATAGTACCATCTTCTGGTTCGTCATCACCAGGTCAGCAAGATAGTTTGCAATGGGGTCAGAGGCCAGTAGAACCAGAGAGTGCCTCAGTTCCTGCAGCGCTTGGACTTGGTCTTCCCTATGACAATGGCTCTGGACTGAAGGAGTTGATGATGGGGACTCCCTCAATGTTTGGTCCAAAGCAGACCACCCTTGATTTTCTCGGGTTGGGGATGGCTGCTGGTGGCACCCCTGGTGGAGGCTTATCAGCACTCATCACCTCTATTGGTGGTGGTCTGGATGTTACTGCTGCAGCAGCATCCTTTGGGAGTGGAGAGTTTTCTGGCAAAGATATTGGGAGGAACACTTGA 1581 0.5066 MPVDLDNVSTASGEASVSSSGNQTVPPKGTTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSNEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRFVPLCDHNTVCTAIFGDLGRAFCDALAEESARSQTQPASKASPESDSKVVSGDSSPPPPAAAPPLSPPPQAPAPPVSSQSNSVVPSALQTQNPELPEISPKIIEEPAANTAMNGSCSSSSTSTGSTSNNNGSTSSSVFASLFASSTASGTLQSQTPAFPDLITAMAHPADLSGPPSSESISLCLATNHASSIFRTGGKERRQYAPPPQPAMSATALLQKAAQMGAAATNTSLLCSLGIVPSSGSSSPGQQDSLQWGQRPVEPESASVPAALGLGLPYDNGSGLKELMMGTPSMFGPKQTTLDFLGLGMAAGGTPGGGLSALITSIGGGLDVTAAAASFGSGEFSGKDIGRNT. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00858 526 FunFam protein indeterminate-domain 12-like 40 108 - -
Seca10g00858 526 MobiDBLite consensus disorder prediction 9 30 - -
Seca10g00858 526 MobiDBLite consensus disorder prediction 230 249 - -
Seca10g00858 526 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 485 IPR031140 -
Seca10g00858 526 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Seca10g00858 526 SMART c2h2final6 61 83 IPR013087 -
Seca10g00858 526 SMART c2h2final6 102 132 IPR013087 -
Seca10g00858 526 SMART c2h2final6 137 157 IPR013087 -
Seca10g00858 526 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Seca10g00858 526 MobiDBLite consensus disorder prediction 417 433 - -
Seca10g00858 526 MobiDBLite consensus disorder prediction 417 438 - -
Seca10g00858 526 Gene3D Classic Zinc Finger 58 158 - -
Seca10g00858 526 MobiDBLite consensus disorder prediction 250 270 - -
Seca10g00858 526 MobiDBLite consensus disorder prediction 1 43 - -
Seca10g00858 526 MobiDBLite consensus disorder prediction 206 226 - -
Seca10g00858 526 MobiDBLite consensus disorder prediction 284 308 - -
Seca10g00858 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Seca10g00858 526 MobiDBLite consensus disorder prediction 206 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00858 Seca-Chr10 8200262 8204305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00858 1 526 IDZ Gene Family AT5G66730 58.394 1.99e-176 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca10g00858 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00858 K25869 - gmx:100806404 739.569