Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00852 ATGAACCATCAACCTATCCAAGACCATATGATGCTCATCTCTCAGTTATACCCTGCTAGTGCATACACTCAAATAATTTCTCAACAAGGGGAGAAGAAGCCAAGACGGCGTCGTAACAAGAAGAGCAAAGGAGGAGAAAACGGGGGCTTGGAAGCTCACAAGAAGAGGAAGCTGAGTATAGAGCAAGTTAATCTACTTGAACAAAATTTTGGAAATGAACACAAACTTGAGTCTGAGAGGAAGGACAGGCTCGCAATGGAGCTTGGTTTGGATCCTCGTCAAGTTGCCGTGTGGTTTCAAAACAGAAGAGCTCGTTGGAAGAACAAAAAATTGGAAGAAGAGTACTCCATCCTTAAAAAATCCCACGAAACCACCTTGCTCGAGAAATGTCGCCTGGAAACTGAGGTAGTGTTGAAGCTGAAGGAGCAACTCTCAGAGGCAGAGAAGGAGATTCAGCGGCTGCTAGAGCGTGGTGGTGATGTAGTCCCAAGCAACAGCTGCAGTTCGTCACAGTCACAATCAATGGAAGCGGTGGACCCACCATTTCTTGGAGAATTTGGGGTTGATGGATATGATGATGATGTGTTTTACGTGCCTGAGACCCATTACATCAATGGCATGGAATGGATTAATCTGTACATGTAA 645 0.4512 MNHQPIQDHMMLISQLYPASAYTQIISQQGEKKPRRRRNKKSKGGENGGLEAHKKRKLSIEQVNLLEQNFGNEHKLESERKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSILKKSHETTLLEKCRLETEVVLKLKEQLSEAEKEIQRLLERGGDVVPSNSCSSSQSQSMEAVDPPFLGEFGVDGYDDDVFYVPETHYINGMEWINLYM. 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00852 214 Coils Coil 101 121 - -
Seca10g00852 214 Gene3D - 45 118 - -
Seca10g00852 214 MobiDBLite consensus disorder prediction 27 54 - -
Seca10g00852 214 FunFam homeobox-leucine zipper protein ATHB-40 48 117 - -
Seca10g00852 214 SUPERFAMILY Homeodomain-like 53 118 IPR009057 -
Seca10g00852 214 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Seca10g00852 214 CDD homeodomain 54 110 IPR001356 GO:0003677
Seca10g00852 214 SMART HOX_1 52 113 IPR001356 GO:0003677
Seca10g00852 214 Pfam Homeodomain 54 108 IPR001356 GO:0003677
Seca10g00852 214 Coils Coil 130 157 - -
Seca10g00852 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 171 IPR045224 GO:0003700
Seca10g00852 214 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
Seca10g00852 214 PRINTS Lambda-repressor HTH signature 80 89 IPR000047 GO:0003677
Seca10g00852 214 PRINTS Lambda-repressor HTH signature 89 105 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00852 Seca-Chr10 8142109 8144156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00852 1 214 Homeobox Transcription Factor Family AT4G36740 57.848 9.34e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca10g00852 Homeodomain 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00852 K09338 - gmx:100809616 337.806