Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00834 ATGGCTTCTCGGGGTACCAATTCCTTCCTTTGGCACTTTGTTTTGGCTATTGTGATTGCCACCCTTTTCATTCCAAACCTTTGTTCAGCCAAGCAATCCAAGATAATTGGCTTGAAAATGAATGTGATTGATAGATGCTGGAGACCCAATCCTGAATGGAGGAGGCATCGATCTCAACTAGCCACTTGCTCTGTTGGCTATGCTGGCAAGATGACAAGCAACATTGGTAAGGACCTCGTCCTTTATAAAGTTACTGACCACAGCGATGACCCAATAAACCCCAGACCTGGTACCTTGAGGTATGGAGCTTCTGTAATTCAAGGTAAAGTGTGGATCAGATTCCAAAGAGACATGCACATTAGACTCCAGAGACCCCTTCTCATTAGTAGTTTCACCACTATTGATGGTCGAGGCGTCAACGTCCATATTGCTCATAATGCATGTTTAATGATCTACAAGGCTACCAATGTAATCATCCATGGTATTCGGGTTCATAATTGCAAAGCTCAAGCCCCTGGATTGGTGGTTGGGCCTAATGGAAAGTTAATTCCTTTGGGCCAAGTAGATGCAGATGCAATTAGATTGGTTACCGCTTCAAATATTTGGATTGATCATAATACCTTTTATGATTGTGAAGATGGGCTTCTTGATGTCACAAGGGGTTCCACTAATGTGACTATATCCAATAACTGGTTCAGAAACCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGGTATGTAAGAGACCAAAACATGAAGGTTACCGTTGTGTACAACCATTTTGGACCCAATTGCAACCAGCGCATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAATAATCTTTACCAGGGTTGGCTGCAATACGCGATCGGTGGAAGCATGGAACCTAGCCAATCCCCTCCCCCTTGCCCCTTCTTCGTCGTCTTCCCCGCCCCCTCTCCACCCCCCTAA 960 0.45 MASRGTNSFLWHFVLAIVIATLFIPNLCSAKQSKIIGLKMNVIDRCWRPNPEWRRHRSQLATCSVGYAGKMTSNIGKDLVLYKVTDHSDDPINPRPGTLRYGASVIQGKVWIRFQRDMHIRLQRPLLISSFTTIDGRGVNVHIAHNACLMIYKATNVIIHGIRVHNCKAQAPGLVVGPNGKLIPLGQVDADAIRLVTASNIWIDHNTFYDCEDGLLDVTRGSTNVTISNNWFRNQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWLQYAIGGSMEPSQSPPPCPFFVVFPAPSPPP. 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00834 319 SUPERFAMILY Pectin lyase-like 40 299 IPR011050 -
Seca10g00834 319 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Seca10g00834 319 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Seca10g00834 319 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Seca10g00834 319 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Seca10g00834 319 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Seca10g00834 319 Pfam Pectate lyase 128 293 IPR002022 -
Seca10g00834 319 SMART amb_all 117 318 IPR002022 -
Seca10g00834 319 PANTHER PECTATE LYASE 18-RELATED 38 300 IPR045032 GO:0030570
Seca10g00834 319 Gene3D - 40 301 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00834 Seca-Chr10 7910269 7911439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00834 71 299 Polysaccharide Lyase AT5G09280 72.489 4.15e-132 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00834 K01728 - gmx:100780437 526.554