Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca10g00833 | ATGCCTCTCTTTCCTTTCATCACTGTCTTCATTTTCACCTTATTGATCTCCCACTTCTCTGTCATTCAGGGGCAGCAACCTTATATTGCTCGAGCCACAACAGCCTGTCCTCGAAGGGGTGATTCAAATTCTATGCGTGGTTACATTTGTAATGGCGCAAATCACACCTGCCAAGCTTACCTTACCTTCAGATCTCAACCTATTTACAGCTCAGTTCACACAATTTCTGCTCTCTTGGGTTCTGACCCATCTCAGCTTGCTGAAATAAATTCAGTTTCCCTGAATGACACCTTTGACACAAACAAGTTAGTGCTTGTTCCTGTCAACTGTTCTTGTGCAGGTCAATATTATCAGGCAAACACATCCTATGTGTTCCAGAACACAGACACCTACTTTTTGATTGCTAACAACACTTTTGAGGGCCTCTCATCTTGTCAAGCATTGATGCATGAAAACCACAATCCTGGTGATATATACCCTGGTAGAAAACTCATGGTTCCTCTTAGATGTGCTTGTCCTACAAAGAATCAAACTGAGAAAGGCATCAAGTACCTCTTAAGTTACTTGGTAGACTGGGGTGATTCTGTCTCATTCATTAGTAACAGATTTGGTGTCAACTTTAAGACAACTCTTGAAGCTAATACCCTTTCCTTGACATCCATTATCTATCCCTTTACCACACTTCTAGTTCCCCTTCATGATAAGCCATCAAGTTCTCAAATTGTTTCACCACCTCAACCCTCTCCCTCATCCCCCTCTTCCTCTTCCACAGATCAAAGCTCAAACAAAACATGGGTGTATGTAGTTGTTGGAGTACTTGGAGGAGTTCTTGCCTTAACAGTAGTTTTCTCTGCTGTCATGTTCTTCACACGCTATAACAAAAGTAAAAAGAAAGATGATTCAGTGATTGTGTCTAAGAGTTTTGAGGCAGTTGAGAAACCACCACCACAAGAGAAGGAAAATGAAAAATTGCAAGAGATCATATCAGGCATAGCTCAATCTTTCAAAGTGTATGGTTTTGAGGAACTAAAGCTTGCAACAGATAATTTTAGTCCAAGTTGTTGGATTAAAGGATCTGTTTTTCGTGGTGTGATTAATGGAGATTTGGCTGCAATTAAGAAAACAGAAGGAGATGTGTCCAAAGAGATACAAATACTCAACAAAGTGAACCATTCTAATGTTATACGCCTCTCTGGGGTTAGCTTCAACCAGGGCCAATGGTACCTTGTTTATGAGTATGCTGCTAATGGAGCATTGAGTGATTGGATCTATTTCAACAACGTGGATGGCAAGTTTCTGAGTTGGACTCAGAGGATTCAGATTGCATTTGATGTGGCCACAGGAGTTGACTATCTTCATAATTTCACTTCTCCTCCTCATATCCACAAGGATTTGAAAAATAGTAACATTCTTTTGGACAGTGATTTCAGGGCAAAGGTTGCAAATTTAAGCCTTGCGAGGTCTGTGGAAGGAGTGGATGATCAATTTCTTGCAACAAGGCATATTGTTGGGACAAGAGGTTACATGGCTCCTGAGTATTTGGAAAATGGTCTTGTTTCTACAAAGCTTGATGTCTATGCATTTGGGGTGATGATGCTTGAAATCCTCACTGGAAAAGAGGTTGCTGCTATTTTAACAGAAGATAATCCAAATTTGGAAGATGTTTTGAGTGCTATACTTGGTGAGAAAGGTGGCCAGGAGAGGTTGAAGGAGTTTATGGATCCCTCTCTTCAAGGAAATTATCCATTAGAACTTGCTATGTTTGTGGTTGAAATGATTGATAATTGCATCAAGAAAGATCCAACAAGTCGCCCTGCCATGCATGAGATTGTGCCATCTCTGTCAATAACACTGAACTCTTCTTGA | 1866 | 0.4057 | MPLFPFITVFIFTLLISHFSVIQGQQPYIARATTACPRRGDSNSMRGYICNGANHTCQAYLTFRSQPIYSSVHTISALLGSDPSQLAEINSVSLNDTFDTNKLVLVPVNCSCAGQYYQANTSYVFQNTDTYFLIANNTFEGLSSCQALMHENHNPGDIYPGRKLMVPLRCACPTKNQTEKGIKYLLSYLVDWGDSVSFISNRFGVNFKTTLEANTLSLTSIIYPFTTLLVPLHDKPSSSQIVSPPQPSPSSPSSSSTDQSSNKTWVYVVVGVLGGVLALTVVFSAVMFFTRYNKSKKKDDSVIVSKSFEAVEKPPPQEKENEKLQEIISGIAQSFKVYGFEELKLATDNFSPSCWIKGSVFRGVINGDLAAIKKTEGDVSKEIQILNKVNHSNVIRLSGVSFNQGQWYLVYEYAANGALSDWIYFNNVDGKFLSWTQRIQIAFDVATGVDYLHNFTSPPHIHKDLKNSNILLDSDFRAKVANLSLARSVEGVDDQFLATRHIVGTRGYMAPEYLENGLVSTKLDVYAFGVMMLEILTGKEVAAILTEDNPNLEDVLSAILGEKGGQERLKEFMDPSLQGNYPLELAMFVVEMIDNCIKKDPTSRPAMHEIVPSLSITLNSS. | 622 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca10g00833 | 621 | CDD | LysM | 187 | 230 | IPR018392 | - | |
Seca10g00833 | 621 | PANTHER | LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED | 6 | 620 | - | - | |
Seca10g00833 | 621 | Gene3D | LysM domain | 186 | 243 | IPR036779 | - | |
Seca10g00833 | 621 | Pfam | LysM domain | 192 | 231 | IPR018392 | - | |
Seca10g00833 | 621 | MobiDBLite | consensus disorder prediction | 237 | 260 | - | - | |
Seca10g00833 | 621 | ProSiteProfiles | Protein kinase domain profile. | 297 | 618 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca10g00833 | 621 | ProSiteProfiles | LysM domain profile. | 186 | 230 | IPR018392 | - | |
Seca10g00833 | 621 | Gene3D | Transferase(Phosphotransferase) domain 1 | 415 | 620 | - | - | |
Seca10g00833 | 621 | SMART | serkin_6 | 355 | 616 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca10g00833 | 621 | Pfam | Protein kinase domain | 373 | 611 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca10g00833 | 621 | FunFam | PTI1-like tyrosine-protein kinase 3 | 414 | 621 | - | - | |
Seca10g00833 | 621 | Gene3D | Phosphorylase Kinase; domain 1 | 318 | 413 | - | - | |
Seca10g00833 | 621 | SUPERFAMILY | Protein kinase-like (PK-like) | 333 | 614 | IPR011009 | - | |
Seca10g00833 | 621 | SMART | LysM_2 | 187 | 231 | IPR018392 | - | |
Seca10g00833 | 621 | SMART | LysM_2 | 122 | 167 | IPR018392 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca10g00833 | Seca-Chr10 | 7899872 | 7901737 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca10g00833 | 1 | 621 | Receptor kinase-like Gene Family | AT2G23770 | 43.760 | 1.05e-168 | 493 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LysM | Seca10g00833 | Pkinase | 4.7e-37 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca10g00833 | - | - | gmx:100815842 | 926.006 |