Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00833 ATGCCTCTCTTTCCTTTCATCACTGTCTTCATTTTCACCTTATTGATCTCCCACTTCTCTGTCATTCAGGGGCAGCAACCTTATATTGCTCGAGCCACAACAGCCTGTCCTCGAAGGGGTGATTCAAATTCTATGCGTGGTTACATTTGTAATGGCGCAAATCACACCTGCCAAGCTTACCTTACCTTCAGATCTCAACCTATTTACAGCTCAGTTCACACAATTTCTGCTCTCTTGGGTTCTGACCCATCTCAGCTTGCTGAAATAAATTCAGTTTCCCTGAATGACACCTTTGACACAAACAAGTTAGTGCTTGTTCCTGTCAACTGTTCTTGTGCAGGTCAATATTATCAGGCAAACACATCCTATGTGTTCCAGAACACAGACACCTACTTTTTGATTGCTAACAACACTTTTGAGGGCCTCTCATCTTGTCAAGCATTGATGCATGAAAACCACAATCCTGGTGATATATACCCTGGTAGAAAACTCATGGTTCCTCTTAGATGTGCTTGTCCTACAAAGAATCAAACTGAGAAAGGCATCAAGTACCTCTTAAGTTACTTGGTAGACTGGGGTGATTCTGTCTCATTCATTAGTAACAGATTTGGTGTCAACTTTAAGACAACTCTTGAAGCTAATACCCTTTCCTTGACATCCATTATCTATCCCTTTACCACACTTCTAGTTCCCCTTCATGATAAGCCATCAAGTTCTCAAATTGTTTCACCACCTCAACCCTCTCCCTCATCCCCCTCTTCCTCTTCCACAGATCAAAGCTCAAACAAAACATGGGTGTATGTAGTTGTTGGAGTACTTGGAGGAGTTCTTGCCTTAACAGTAGTTTTCTCTGCTGTCATGTTCTTCACACGCTATAACAAAAGTAAAAAGAAAGATGATTCAGTGATTGTGTCTAAGAGTTTTGAGGCAGTTGAGAAACCACCACCACAAGAGAAGGAAAATGAAAAATTGCAAGAGATCATATCAGGCATAGCTCAATCTTTCAAAGTGTATGGTTTTGAGGAACTAAAGCTTGCAACAGATAATTTTAGTCCAAGTTGTTGGATTAAAGGATCTGTTTTTCGTGGTGTGATTAATGGAGATTTGGCTGCAATTAAGAAAACAGAAGGAGATGTGTCCAAAGAGATACAAATACTCAACAAAGTGAACCATTCTAATGTTATACGCCTCTCTGGGGTTAGCTTCAACCAGGGCCAATGGTACCTTGTTTATGAGTATGCTGCTAATGGAGCATTGAGTGATTGGATCTATTTCAACAACGTGGATGGCAAGTTTCTGAGTTGGACTCAGAGGATTCAGATTGCATTTGATGTGGCCACAGGAGTTGACTATCTTCATAATTTCACTTCTCCTCCTCATATCCACAAGGATTTGAAAAATAGTAACATTCTTTTGGACAGTGATTTCAGGGCAAAGGTTGCAAATTTAAGCCTTGCGAGGTCTGTGGAAGGAGTGGATGATCAATTTCTTGCAACAAGGCATATTGTTGGGACAAGAGGTTACATGGCTCCTGAGTATTTGGAAAATGGTCTTGTTTCTACAAAGCTTGATGTCTATGCATTTGGGGTGATGATGCTTGAAATCCTCACTGGAAAAGAGGTTGCTGCTATTTTAACAGAAGATAATCCAAATTTGGAAGATGTTTTGAGTGCTATACTTGGTGAGAAAGGTGGCCAGGAGAGGTTGAAGGAGTTTATGGATCCCTCTCTTCAAGGAAATTATCCATTAGAACTTGCTATGTTTGTGGTTGAAATGATTGATAATTGCATCAAGAAAGATCCAACAAGTCGCCCTGCCATGCATGAGATTGTGCCATCTCTGTCAATAACACTGAACTCTTCTTGA 1866 0.4057 MPLFPFITVFIFTLLISHFSVIQGQQPYIARATTACPRRGDSNSMRGYICNGANHTCQAYLTFRSQPIYSSVHTISALLGSDPSQLAEINSVSLNDTFDTNKLVLVPVNCSCAGQYYQANTSYVFQNTDTYFLIANNTFEGLSSCQALMHENHNPGDIYPGRKLMVPLRCACPTKNQTEKGIKYLLSYLVDWGDSVSFISNRFGVNFKTTLEANTLSLTSIIYPFTTLLVPLHDKPSSSQIVSPPQPSPSSPSSSSTDQSSNKTWVYVVVGVLGGVLALTVVFSAVMFFTRYNKSKKKDDSVIVSKSFEAVEKPPPQEKENEKLQEIISGIAQSFKVYGFEELKLATDNFSPSCWIKGSVFRGVINGDLAAIKKTEGDVSKEIQILNKVNHSNVIRLSGVSFNQGQWYLVYEYAANGALSDWIYFNNVDGKFLSWTQRIQIAFDVATGVDYLHNFTSPPHIHKDLKNSNILLDSDFRAKVANLSLARSVEGVDDQFLATRHIVGTRGYMAPEYLENGLVSTKLDVYAFGVMMLEILTGKEVAAILTEDNPNLEDVLSAILGEKGGQERLKEFMDPSLQGNYPLELAMFVVEMIDNCIKKDPTSRPAMHEIVPSLSITLNSS. 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00833 621 CDD LysM 187 230 IPR018392 -
Seca10g00833 621 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 6 620 - -
Seca10g00833 621 Gene3D LysM domain 186 243 IPR036779 -
Seca10g00833 621 Pfam LysM domain 192 231 IPR018392 -
Seca10g00833 621 MobiDBLite consensus disorder prediction 237 260 - -
Seca10g00833 621 ProSiteProfiles Protein kinase domain profile. 297 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00833 621 ProSiteProfiles LysM domain profile. 186 230 IPR018392 -
Seca10g00833 621 Gene3D Transferase(Phosphotransferase) domain 1 415 620 - -
Seca10g00833 621 SMART serkin_6 355 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00833 621 Pfam Protein kinase domain 373 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00833 621 FunFam PTI1-like tyrosine-protein kinase 3 414 621 - -
Seca10g00833 621 Gene3D Phosphorylase Kinase; domain 1 318 413 - -
Seca10g00833 621 SUPERFAMILY Protein kinase-like (PK-like) 333 614 IPR011009 -
Seca10g00833 621 SMART LysM_2 187 231 IPR018392 -
Seca10g00833 621 SMART LysM_2 122 167 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00833 Seca-Chr10 7899872 7901737 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00833 1 621 Receptor kinase-like Gene Family AT2G23770 43.760 1.05e-168 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca10g00833 Pkinase 4.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00833 - - gmx:100815842 926.006