Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00832 ATGATTGATGAAGGGTCACTTCCCAATTGCAGAAGCTACACTATAATAATTGAGCACCTTGTGAAATCCCGAAAATTATCAGAAGCCATGGAGGTCTTTAACTTGTTGCCTTCCATGAGGATCAAACGCACCTTGAAACTGTACTCTATTCTGATTGAAGGTTTTGTTGGGAGCAAACGGTTTGATGAAGTCAGAATTTTAGTGAATGAAATGCAAGTTGATGGAATATTGCCTAGTCGAGCCATGAGTCTGTCATTGCAACAGATGCAGGAGGAAGGATTTCTTAAGGAGATGGATGAATTGTTTAGAGAAATTTCGCCAGATGAAAGAATCAAGAATGTAAGATATTCTATTGATAGCAGTGATGAGGATGAGGATGAGGAAGAGGATGAGAATGAAAATCATGCTTGTCAAGGTGATCAAATTGATGAGATTCATTTAAAACCGTGGCTGGACCCAATGGCTTTGGCTAATGCCCTACAGAATTGGAATCCTGATGAGGTATCAGCACTAGAGGGTGCAAACTTTGTGTGGACAACCAGGTTGGTTTGCAAGATACTTAGAAATTTCAAGTCACCAGAAACTGCCTGGAATTTCTTCTGCTGGGTTGCTTATCAACCTGGATTCACTCATAACATATACACAGTACAAAGGATCATAACCCTTCTATCATGCCATGGGCGTACCGAATTGGTTGATAAACTCATCTCCAAGATCAGAATGGAGGGAATGAGACTGCCATTCAGCACCATCAGGCTAATCATTGACTTTTATGGGATTTCAAAAAATGCTGATGCTGCTCTGAAGGTTTTCAATGAGGATAGAACACTTTGTGGGCACATATCAAAATATAATATGATGCTTCTGTATTCCTCTCTTCTAAGAACATTAACCAAGTGTGGAAGGAATTCTGATGCACTGGATATGCTTGATGAGATGATTTTAAATGGTATATGCCCAGATATTCAAACATTTTCAGGTCTAATGCACTATTTTTCACACCTTGGAGACATTAAAACCGTGCAGAAACTCTTTGGAATGGTCAGGCAGAGCGGTTTAGAGCCAGATGCTTATCTGTACAAGGTACTTATTGGAGGTTATTGCAAGTCAAAAAGAGCTGCACTGGCATGGAGGCTATTTGAAGACATGAAGAATTCAGGTTTGGTGCCTGACTCTGCTATCAAAGAGTTGCTAGTGAAGAGCCTTTGGAAAGAAGGGAGACGGAGAGAGGCTGCAGCAGTGGAAGAGAGCTGTGAGGAAATAGGTACAGTCCTTCCACTTGCATTGCCTGGTCATGTATGGACTGTCAGCTCTGCAGATCTCACAAGAGCCAATGACAATGTTCCCCTTGTAAGTTCCAAGTTTGGTGCATCATCAGTGGACATATTGGCTGAAAACAACTATGGTCAAAACTTCACCACTGCAACCAACCTTCCAGTTTTGATCCCAGTGACAAGGTTGCCAGATCTTACTCAACCTACTTCAAATGGAGCTGAGAATGCAGATAAGCTACTTTCAGGAGTTTCAGGGTATGTGAGCAAGCCAACCGTGTATGAAATTGATGCAATCATGGAAGGTACCATGAACCTCAGTGACCAGTGCAAGATTGGGGAATCAATGTACAAGGCTAATATAGATGGTCGGATTTTAGCAGTGAAAAAAGTCAAGGAAGCATCTGAGGAGCTGAAAATTCTGCAAAAGGTAAATCATGGAAATCTGGTGAAATTAATGGGTGTGTCTTCAGATAATGATGGAAACTGTTTCTTGGTTTATGAATATGCTGAAAATGGGTCTCTAGATGAGTGGCTATTCTCCAAGTCTTCAGGAACCTCAAACTCCATGGTCTCTCTTACATGGTCTCAGAGGATAAGCATAGCAATGGATGTTGCTGTGGGTCTACAATACATGCATGAACATACTTATCCAAGAATAGTCCACAGGGACATCACATCAAGTAATATCCTTCTTGACTCAAACTTTAAGGCCAAGATAGCAAATTTCTGTATGGCCAGAACTTCAACCAACCCTATGATGCCAAAAATAGATGTCTTTGCTTTTGGGGTGGTTCTGATAGAGTTGCTTAGTGGAAGGAAAGCCATAACAACAAAAGAAAATGGTGAGGTGGTTATGCTGTGGAAAGATGTTTGGAAGATCTTTGATATAGAAGAGAATAGAGAGGAGAGTCTCCGAAAATGGATGGATCCTAAGTTAGAGAGCTTTTATCCAATAGATAATGCTCTCAGCTTGGCCTCTTTGGCAGTGAATTGCACTGCAGAGAAGTCTTTATCCAGACCAAGCATGGCAGAAATTGTTCTTAGCCTCTCTCTTCTCACTACTCAACCATCTTACCCAACATTAGAGAGATCCTTGACTTCTGGGTTAGATGTGGAAGATACTCAAATTGTCACTTCCATAGCTGCACGTTGA 2427 0.4124 MIDEGSLPNCRSYTIIIEHLVKSRKLSEAMEVFNLLPSMRIKRTLKLYSILIEGFVGSKRFDEVRILVNEMQVDGILPSRAMSLSLQQMQEEGFLKEMDELFREISPDERIKNVRYSIDSSDEDEDEEEDENENHACQGDQIDEIHLKPWLDPMALANALQNWNPDEVSALEGANFVWTTRLVCKILRNFKSPETAWNFFCWVAYQPGFTHNIYTVQRIITLLSCHGRTELVDKLISKIRMEGMRLPFSTIRLIIDFYGISKNADAALKVFNEDRTLCGHISKYNMMLLYSSLLRTLTKCGRNSDALDMLDEMILNGICPDIQTFSGLMHYFSHLGDIKTVQKLFGMVRQSGLEPDAYLYKVLIGGYCKSKRAALAWRLFEDMKNSGLVPDSAIKELLVKSLWKEGRRREAAAVEESCEEIGTVLPLALPGHVWTVSSADLTRANDNVPLVSSKFGASSVDILAENNYGQNFTTATNLPVLIPVTRLPDLTQPTSNGAENADKLLSGVSGYVSKPTVYEIDAIMEGTMNLSDQCKIGESMYKANIDGRILAVKKVKEASEELKILQKVNHGNLVKLMGVSSDNDGNCFLVYEYAENGSLDEWLFSKSSGTSNSMVSLTWSQRISIAMDVAVGLQYMHEHTYPRIVHRDITSSNILLDSNFKAKIANFCMARTSTNPMMPKIDVFAFGVVLIELLSGRKAITTKENGEVVMLWKDVWKIFDIEENREESLRKWMDPKLESFYPIDNALSLASLAVNCTAEKSLSRPSMAEIVLSLSLLTTQPSYPTLERSLTSGLDVEDTQIVTSIAAR. 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00832 808 Gene3D Phosphorylase Kinase; domain 1 506 593 - -
Seca10g00832 808 Pfam PPR repeat family 355 392 IPR002885 -
Seca10g00832 808 Gene3D Tetratricopeptide repeat domain 286 425 IPR011990 GO:0005515
Seca10g00832 808 Gene3D Tetratricopeptide repeat domain 1 150 IPR011990 GO:0005515
Seca10g00832 808 MobiDBLite consensus disorder prediction 120 134 - -
Seca10g00832 808 Gene3D Transferase(Phosphotransferase) domain 1 594 675 - -
Seca10g00832 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Seca10g00832 808 MobiDBLite consensus disorder prediction 116 138 - -
Seca10g00832 808 SUPERFAMILY Protein kinase-like (PK-like) 540 774 IPR011009 -
Seca10g00832 808 Pfam Protein tyrosine and serine/threonine kinase 555 673 IPR001245 GO:0004672|GO:0006468
Seca10g00832 808 PANTHER OS01G0167750 PROTEIN 1 444 IPR044175 -
Seca10g00832 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Seca10g00832 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Seca10g00832 808 Gene3D Transferase(Phosphotransferase) domain 1 676 785 - -
Seca10g00832 808 ProSiteProfiles Protein kinase domain profile. 498 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00832 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Seca10g00832 808 ProSitePatterns Tyrosine protein kinases specific active-site signature. 644 656 IPR008266 GO:0004672|GO:0006468
Seca10g00832 808 Gene3D Tetratricopeptide repeat domain 172 285 IPR011990 GO:0005515
Seca10g00832 808 Pfam PPR repeat 12 38 IPR002885 -
Seca10g00832 808 Pfam PPR repeat 290 318 IPR002885 -
Seca10g00832 808 Pfam PPR repeat 48 76 IPR002885 -
Seca10g00832 808 NCBIfam pentatricopeptide repeat 12 42 IPR002885 -
Seca10g00832 808 NCBIfam pentatricopeptide repeat 47 79 IPR002885 -
Seca10g00832 808 NCBIfam pentatricopeptide repeat 290 322 IPR002885 -
Seca10g00832 808 NCBIfam pentatricopeptide repeat 359 392 IPR002885 -
Seca10g00832 808 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00832 Seca-Chr10 7889826 7894633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00832 507 779 Receptor kinase-like Gene Family AT2G33580 38.033 1.10e-52 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca10g00832 PK_Tyr_Ser-Thr 9.7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00832 - - cam:101514749 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00832 10 7889826 7894633 Seca10g00832 10 7889826 7894633 ECH