Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00828 ATGGCCCTGGCCGAATTATCCACAGAACAGGTTCTGAGGAGGGACATCCCATGGGAGACCTACATGTCCACTAAGCTTATCTCAGGCACAAGCCTTCAGCTCTTAAGGCGTTATGATCATCGATCAGAAAGTCACAGAGCACAGTTGCTGGATGATGATGGTCCAGCTTATGTTCGTGTATTCGTTCGTGTTTTGTGTGATATTTTCAAAGAAGAGACTGTAGAATATGTTTTAGCATTGATAGATGAAATGCTCGCAGCGAATCCGAAAAGAGCAAGACTGTTTCATGATAAGACCCTTGCAGATGAAGACACTTACGAACCCTTCCTAAGAAATTGGTTCATACAGGAGAAAAGTTGTAAGATCCTTAGTTTAATAGCTAGTGCCAGGCCAAAAGATCAAAAGGGCAGTGTTGCAAATGGAGAAACATCAAACTCAAAGAAACCATTTACCGCCATTGATGACGCTTTGATAGGATTGGTAAAATGGCTTTGTGAACAGCTGAAGAAACCCTCTCATCCTACTCGGGGTGTCCCAACCGCTATCAATTGCCTAGCAACTCTACTTAAGGAACCTGTGGTTAGGTCTACCTTTGTTCAAATGGATGGGATCAAGTTGCTCATACCTTTGATTTCTCCAGCATCCACCCAACAGTCTATTCAACTTCTTTATGAAACTTGTCTCTGCATATGGCTCCTATCCTATTATGAGCCGGCCATTGAATACCTGGCTACTTCAAGAACCCTTCCACGACTTATTGACGTTGTCAAGAGTTCTACAAAAGAGAAGGTTGTTAGAGTGATTGTCTCAACCCTTAAGAACTTATTGTCAAAAGGGACATTGGGTGCTCAAATGGTTGACCTTCAGCTACCACAAGTTGTTCAGAGTTTGAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGCATTGAATTGCCTGGAAGAAGGGCTAAAGGATAACATTAAGAAACTAAGTTCTTATGATAAGTATAAGCAAGAAGTTCTCCTTGGCCATCTGGATTGGACTCCTGTGCACAAAGATCCCATATTTTGGCGAGAAAATATTACCAACTTCGAAGAGAATGATTTCCAGATTTTGAGGGTCCTAATAACAATTTTAGACACGTCAAATGATCCAAGGACTCTGGCCGTTGCTTGCTTTGATCTTTCACAGTTCATCCAACACCATCCTGCTGGGCGTATCATTGTGACTGACCTTAAAGCCAAGGAACGAGCAATGAAATTAATGAATCACGAGAATGCTGAAGTTACTAAAAATGCGCTCCTCTGCATCCAACGGCTTCTCTTAGGTGCGAAATATGCCAGCTTCCTGCAGGCATAG 1344 0.4263 MALAELSTEQVLRRDIPWETYMSTKLISGTSLQLLRRYDHRSESHRAQLLDDDGPAYVRVFVRVLCDIFKEETVEYVLALIDEMLAANPKRARLFHDKTLADEDTYEPFLRNWFIQEKSCKILSLIASARPKDQKGSVANGETSNSKKPFTAIDDALIGLVKWLCEQLKKPSHPTRGVPTAINCLATLLKEPVVRSTFVQMDGIKLLIPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTLPRLIDVVKSSTKEKVVRVIVSTLKNLLSKGTLGAQMVDLQLPQVVQSLKAQAWSDEDLLEALNCLEEGLKDNIKKLSSYDKYKQEVLLGHLDWTPVHKDPIFWRENITNFEENDFQILRVLITILDTSNDPRTLAVACFDLSQFIQHHPAGRIIVTDLKAKERAMKLMNHENAEVTKNALLCIQRLLLGAKYASFLQA. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00828 447 PIRSF V-ATP_synth_H 1 446 IPR004908 GO:0000221|GO:0046961|GO:1902600
Seca10g00828 447 Coils Coil 407 427 - -
Seca10g00828 447 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 4 446 IPR004908 GO:0000221|GO:0046961|GO:1902600
Seca10g00828 447 Pfam V-ATPase subunit H 6 318 IPR004908 GO:0000221|GO:0046961|GO:1902600
Seca10g00828 447 SMART arm_5 397 437 IPR000225 GO:0005515
Seca10g00828 447 SMART arm_5 190 235 IPR000225 GO:0005515
Seca10g00828 447 SMART arm_5 236 277 IPR000225 GO:0005515
Seca10g00828 447 FunFam V-type proton ATPase subunit H 338 439 - -
Seca10g00828 447 Gene3D - 338 439 IPR038497 -
Seca10g00828 447 Pfam V-ATPase subunit H 324 437 IPR011987 GO:0000221|GO:1902600
Seca10g00828 447 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 393 400 IPR018506 GO:0020037
Seca10g00828 447 SUPERFAMILY ARM repeat 8 437 IPR016024 -
Seca10g00828 447 Gene3D - 2 326 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00828 Seca-Chr10 7862335 7869770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00828 1 447 Primary Pumps ATPases(2) AT3G42050 76.991 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00828 K02144 - gmx:100788723 796.578