Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00827 ATGGGTTGGTTTACCAAGTTGCTTAAAGGCTCCAACCATAAAATTTCACGAGGACAATATCATGGCAAATATGGAGATGATAGAATTTGGGATAATCATCAGAGTTCAGTGGATGATTTGACAGATATTGAGAAAGAAGAACTTGATTGTGCGATTGCACTCTCTCTGTCAGAGGAGGATCAGAAAGGGAAAAAAGTTGTCGTGCCTCATAATATCTTAGAGGACGACTCTCAATCTGAAGAAGATGAGGAACTTTGTAAAATTGATGAGGAGGAAGATGAACATCTCAGTAAAGTTCAACCAGAGGAAGATGAACATCTTGGTAAAGTTCAACTAGATGAAGATGAACATCTTGGTAAAGTTCAACAAGATGAAGATGAACATCTTGCTAAGATTCAACAGGAAGAAGAACGTCTTGCTAAAGATCAACTTGAGGAAGATGAGCAACTTGCAAGGGCAATTCAAGAAAGTTTGAAAATTGATTCTCCTCCTCGATATGACAATGATTCTTTATTTCAATCTCTTCCCAACCTCTTTCCACCTGGATACAGAATCTGTGCTGGATGCAACACTGAAATTGGCCATGGAAGATTTTTAAGTTGCATGGGAGCTGTCTGGCATCCACAATGTTTCCGCTGCCATGCTTGCCATATGCCAATAACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAATCCTGCTATAGGGAGAAACATCACCCGAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCAGCTGGCCTCATTGAGTACAGAGCTCATCCTTTCTGGCTACAAAAATACTGCCCATCGCATGAGCTTGATGGTACTCCTCGTTGTTGTAGCTGTGAAAGAATGGAGCCAAGGGATACACAATATCTTTTGCTTGATGATGGTCGAAAGCTGTGTCTTGAGTGTCTAGACTCAGCAATTATGGATACTCATGAATGCCAACCACTCTACCTTGAAATACAGGAATTTTATGAAGGTTTAAATATGAAAGTGGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCGCTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTCTGCTTGTCGGAAGAACAAACTGTCACCACCATTTTAAAGAGACCAAGGATCGGGGAAGGATACCGAGTCATGGACATGATAACTGAGCCTTATAGGCTGATCCGTCGTTGTGAAGTGACAGCCATTCTTGTTTTATATGGCCTTCCTAGGTTGTTAACAGGGTCAATCCTAGCTCATGAGATGATGCATGCATGGCTCAGACTTAAAGGTTATCCCAACCTGAGTCCAGAAGTTGAAGAAGGAATCTGCCAAGTCATGGCTCACATGTGGTTAGAATCAGAGCTCTATTCTGGATCTGGGATTGATGGTGCATCATCTTCGTCCTCATCCTCATCATCGCCTTCCTCCTCCTCTTCTGCATCATCAAAGAAGGGTAAACGGTCAGACTTTGAGAAGAAACTTGGTGAGTTTTTTAAACACCAGATTGAGTCAGATTCCTCCTCAGCATATGGAGATGGTTTCAGATTGGGTAACCAGGCAATGCTTAAGTATGGGCTCAAAAGGACCCTTGACCATATCCAAATGACCGGAAGTTTTCCGTATTGA 1668 0.4203 MGWFTKLLKGSNHKISRGQYHGKYGDDRIWDNHQSSVDDLTDIEKEELDCAIALSLSEEDQKGKKVVVPHNILEDDSQSEEDEELCKIDEEEDEHLSKVQPEEDEHLGKVQLDEDEHLGKVQQDEDEHLAKIQQEEERLAKDQLEEDEQLARAIQESLKIDSPPRYDNDSLFQSLPNLFPPGYRICAGCNTEIGHGRFLSCMGAVWHPQCFRCHACHMPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKNFIPTNSAGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDTQYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILKRPRIGEGYRVMDMITEPYRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVMAHMWLESELYSGSGIDGASSSSSSSSSPSSSSSASSKKGKRSDFEKKLGEFFKHQIESDSSSAYGDGFRLGNQAMLKYGLKRTLDHIQMTGSFPY. 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00827 555 CDD LIM_DA1 186 238 - -
Seca10g00827 555 Pfam Protein DA1 335 550 IPR022087 -
Seca10g00827 555 FunFam Protein DA1-related 1 180 239 - -
Seca10g00827 555 SMART uim 43 62 IPR003903 -
Seca10g00827 555 SMART uim 145 164 IPR003903 -
Seca10g00827 555 MobiDBLite consensus disorder prediction 476 497 - -
Seca10g00827 555 PANTHER PROTEIN DA1-RELATED 2 3 555 IPR045218 -
Seca10g00827 555 ProSiteProfiles LIM domain profile. 184 244 IPR001781 -
Seca10g00827 555 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 178 211 - -
Seca10g00827 555 Coils Coil 118 152 - -
Seca10g00827 555 Gene3D Cysteine Rich Protein 180 244 - -
Seca10g00827 555 Pfam LIM domain 186 241 IPR001781 -
Seca10g00827 555 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 145 164 IPR003903 -
Seca10g00827 555 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 212 267 - -
Seca10g00827 555 ProSitePatterns LIM zinc-binding domain signature. 186 220 IPR001781 -
Seca10g00827 555 MobiDBLite consensus disorder prediction 476 501 - -
Seca10g00827 555 SMART lim_4 185 237 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00827 Seca-Chr10 7844957 7851956 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca10g00827 DA1-like 2.1e-106 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00827 - - gmx:100817969 973