Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00824 ATGTCCCAGGATTATCAGCAAGGAATCTTCACGTTCTCGAATGGGTTCGAGAGATCATCAGCGCAGGCGCAGATCCGGAGGGACAACAAGGTGAGGTTGCAGCAAGGGTTCGAGTCAGCACCACCACCGGCATTAGTAGGGATAGAAGAAGAGCAACCAGGAGGACTTCCGGTGTATGAAACCGCCGGGATGTTGTCGGAGATGTTTAATTTCGCTCCCGGCGGTGGTGAATTGTTGGAACAACAACACCAACCCTCCATGACGGCGTCGTTTCGGTCGTCAAGGCCAGAAGCAGTGGGAAGCGAGTGGTACGGTAGTAACAGACAAGGGATGGTGATAACTGGTTTGGGAGATGCAAAGAATGAAAACAATAACCAGATTTCAAGTATGAATACTGCAGACTCAGCAGCTGCCATGCATCTTTTTCTCATGAATCCTCAAGCGAGATCGCCTTCCCCTCCTCCATCTGTCACTGCAGCTTCTTCCACACTCCACATGTTGCTTCCCAATCCTTCCTCTAATTCAATTCAAGGTTTTGCTGGTTCGGGAGGGTCTTTTGGTCAACTCACATGGGGTCAAGAAGGAGGCACTGCAGGAGGTCTTTCATTATCACTGTCCTCTTCGTTGGAAGCGGCAAAAGCGGAGGAATTGAGGATGGGAGATAGTGGTTTTCTATTTTACAATCAAGGAGGAGGAGGGCCATATCATCCGTACAAGAATCACCACCAGACATTGCATTTACAAGGAGGACAGCATAATAACCACCAACACCAAGGATTCGGTTCAACCTCCTTAGGTGTAGTCAATGTTCTCAGAAATTCAAAATATGTGAAGGCTGCTCAAGAATTGCTCGAAGAGTTTTGCAGTGTTGGAAGGGGTCACTTTAAGAAGAGCAGGCAGAATTCAAATCCCGGTGGCGGTGGTTCTTCATCTTCGTCAAAAGACCCTCCTCCACCTCTGTCAGCGGCGGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCGATGCTTGATGAGGCATTTCCATACACGGCACTGGCACAGAAAGCAATGTCAAAACACTTCCGGTGTCTGAAGGATGCAATAGCAGCACAGCTGAAGCACAGTTGTGAGGTTCTTGGAGAGAAAGATGGAGCAGGGAGTTCAGGTTTGACAAAAGGAGAGACACCAAGGCTTAAGATGCTAGAGCAAAGCCTAAGACAACAGAGAGCATTCCACCAAATGGGAATGATGGAACAGGAAGCTTGGAGACCCCAGAGAGGGTTGCCTGAACGATCTGTCAACATTTTAAGAGCCTGGCTTTTCGAGCATTTTCTCCACCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGGCTATCGCGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAACTTAAAGAAAAAGAAGCAGAGTGTGCAGAAGAGAGAGAAAAGAGCAATAGTGGCCACCAAGCACAAACTCCAACCACACCAACAGCAACAGCGCCACCACCCCCAACAACAGCCAAAAGATCCGATATCAATGCCACTGAAAGCGACCCTTCACTCCTCGCAATCAATAGACAACCGTTCTCGGAAAACCAAGCAATCCACTCCTCCACCACGGCCGTCAGCGCCACCGCCTCTGAGGTGGCGCCACCCGTGTCTCAATGCTTTGACTCAGACCTGCCACCACCACACAGATCAATTATGACCAGCGATGACACGTGTCGCTTGGTTTCAGCAGATTATGGGACCGCCTCTGCTGCAACTGCTGCTGACATTGGATCCACTCTCATTAGATTTGGGACCACAGCTGGTGACGTGTCACTCACCTTAGGGCTACGCCACGCCGGCAACATGCCTGCTGCAGATAAAACTTCTCCTTTCTCTGTTAGAGACTTTGGAGCCATTTAA 1965 0.4931 MSQDYQQGIFTFSNGFERSSAQAQIRRDNKVRLQQGFESAPPPALVGIEEEQPGGLPVYETAGMLSEMFNFAPGGGELLEQQHQPSMTASFRSSRPEAVGSEWYGSNRQGMVITGLGDAKNENNNQISSMNTADSAAAMHLFLMNPQARSPSPPPSVTAASSTLHMLLPNPSSNSIQGFAGSGGSFGQLTWGQEGGTAGGLSLSLSSSLEAAKAEELRMGDSGFLFYNQGGGGPYHPYKNHHQTLHLQGGQHNNHQHQGFGSTSLGVVNVLRNSKYVKAAQELLEEFCSVGRGHFKKSRQNSNPGGGGSSSSSKDPPPPLSAADRIEHQRRKVKLLSMLDEAFPYTALAQKAMSKHFRCLKDAIAAQLKHSCEVLGEKDGAGSSGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELKEKEAECAEEREKSNSGHQAQTPTTPTATAPPPPTTAKRSDINATESDPSLLAINRQPFSENQAIHSSTTAVSATASEVAPPVSQCFDSDLPPPHRSIMTSDDTCRLVSADYGTASAATAADIGSTLIRFGTTAGDVSLTLGLRHAGNMPAADKTSPFSVRDFGAI. 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00824 654 SMART HOX_1 418 482 IPR001356 GO:0003677
Seca10g00824 654 MobiDBLite consensus disorder prediction 294 325 - -
Seca10g00824 654 MobiDBLite consensus disorder prediction 295 317 - -
Seca10g00824 654 FunFam BEL1-like homeodomain protein 4 421 483 - -
Seca10g00824 654 Gene3D - 421 483 - -
Seca10g00824 654 ProSiteProfiles 'Homeobox' domain profile. 415 478 IPR001356 GO:0003677
Seca10g00824 654 CDD homeodomain 418 479 IPR001356 GO:0003677
Seca10g00824 654 Pfam Associated with HOX 270 341 IPR006563 -
Seca10g00824 654 Pfam Associated with HOX 342 365 IPR006563 -
Seca10g00824 654 Coils Coil 481 501 - -
Seca10g00824 654 SMART prehox3 265 366 IPR006563 -
Seca10g00824 654 MobiDBLite consensus disorder prediction 491 530 - -
Seca10g00824 654 Pfam Homeobox KN domain 435 474 IPR008422 GO:0003677|GO:0006355
Seca10g00824 654 SUPERFAMILY Homeodomain-like 419 485 IPR009057 -
Seca10g00824 654 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 163 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00824 Seca-Chr10 7808293 7815889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00824 1 465 Homeobox Transcription Factor Family AT4G36870 48.947 1.12e-121 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca10g00824 POX 5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00824 - - gmx:100786231 740.725