Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00806 ATGTTTCTCCATCAGCAGACAAATTTCGCAACTGTGATCACAATCTTAATCTTCTTAGTGAGCACAACAAGAACACAAAACCTCCCAAACTGCGAGAACCGTTGCGGAGAGGAGTCCGTGCAGTACCCTTTTAGCTTCTCTGAAGGTTGTGGAATCAAACTAAACTGTAACAACAGCAAAGTCCAAGTGGGTGATTTTCTGGTTCAGAACATAACCAGCAGCAGCATATTCATCGATCTCCCTGCAAAATGCAACCGTACCATGGAATCCATTCATCCACTTTTCAGTGACAACTTCGCTCCCACACGGAACAATAGTTTTCTGGTGCAAGATTGCAAAGCTTCTCTGGGTGGCTGCGTTATTCCCGCTTCAAGTTTTGTGGGCAATTGCGATAACAGAAGTGGTAATATCAGTTGTTTTACACAGCAGCAGCAACAGGAGCAAGAAGTGGATGTTGTGTCATATGAGGAATTGAACCAAACTGGGTGCAATTACTTGTTCTCAGCAGTTGCTGCTATTGAGAATTCGCTGCAGTTTCAGGTGGTTGAATTGGGGTGGTGGCTTCAAGGGTCGTGTCAATGCTCTCCCAACGCTACCTGCACAATGGTTCATCTCAAAGAAGGGAGCTTTGGGTACCGGTGTCAATGTCCAAATGGTTTCCAAGGAGACGGCTTCGCCAACGGCACCGGTTGCCGGAGAGTCTTGTCATCAGGTCCAAGCTGCAGTGCTTCAACACTGACGTCTGGGGGGTGTGGAAATGGAGCCAAAATCGGTGTTATCGTCGGAGTGATAGTAACTGGAGCTGTGGTCGTGGTTGCTCTCTTTGTTCTATGCTACTGTGCCAGGCGCCGTTCTACTTGGTTGAGAAAACATACCAGAGTAAAGCTCCTTTTACGTGAAGCTGCAGGCAACTCTAGTGTACCTTTATACCCTTATAAAGAAATTGAGAAGGCCACAAATTCTTTCTCTGAGAAACAGAGGCTGGGAAATGGGGCATTTGGTACCGTTTATGCTGGAAAACTTCATAATGATGAGTGGGTTGCTATAAAGAAGATAAGGTATAGAGATACTAACAGTGTTGACCAAGTCATGAATGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCAAATTTAGTTCGCCTCCTAGGTTGCTGCATAGAGGAAGGAGAGCAGATACTTGTTTACGAATATATGCCCAATGGAACACTATCTGAGCATTTGCAAAGAGAAAGGGGTAAAGGTCTTCCATGGACAATAAGACTTACCATTGCTGCTGAAACTTCTCATGCTATAGCATATCTCCATTCTGCAATTCATCCTCCAATTTACCATAGAGACATAAAATCCAGTAATATACTCTTGGATTATAACTTCAAATCTAAAGTAGCTGATTTTGGGCTTTCTAGGCTTGGCATGACAGAGACATCACATATCTCAACTGCCCCACAAGGGACTCCAGGTTATGTGGATCCCCAATATCACCAGAACTTCCATCTTTCTGATAAAAGTGATGTCTACAGCTTTGGAGTGGTTTTGGTAGAGATAATAACTGCCATGAAAGTGGTTGATTTTGGTCGACCTCAGAGTGAGGTTAATTTAGCTGCACTTGCTGTTGATAGAATCAGAAGGGGTTCTGTAGATGAGATCATAGATCCCTTCCTTGAACCACATAGAGATGCTTGGACACTGTATTCCATTCATAAGGTGGCTGAGCTTGCATTTAGATGCCTTGCTTTTCATAGTGACATGAGGCCTACTATGACAGAAGTAGCTGAGGAGCTAGAACATATCAGACGCAGTGGATGGGCAACTATGGAGGAAACTATATGCTTGGCTTCATCAATTGGGTCCACAAGTTCATCACCTCGCAATGGAAGTGAGAAGTCACTGGGTGGTGGTATTAAGTTCAAGAAACCAGGGCAAGGGAGTGAGGGATTGATTGTTCCACAGAAGACCGAGAGTTTCTTGCATCCTATGGAGATGGAGGTGAAGGACAGCTCCCCTGTATCGGTGCATGATCCTTGGTCAAGTGGACACAGCTCACCTTCAACAAACAGCTTGTTGGGGAATGTCGTTCGGTGA 2082 0.4481 MFLHQQTNFATVITILIFLVSTTRTQNLPNCENRCGEESVQYPFSFSEGCGIKLNCNNSKVQVGDFLVQNITSSSIFIDLPAKCNRTMESIHPLFSDNFAPTRNNSFLVQDCKASLGGCVIPASSFVGNCDNRSGNISCFTQQQQQEQEVDVVSYEELNQTGCNYLFSAVAAIENSLQFQVVELGWWLQGSCQCSPNATCTMVHLKEGSFGYRCQCPNGFQGDGFANGTGCRRVLSSGPSCSASTLTSGGCGNGAKIGVIVGVIVTGAVVVVALFVLCYCARRRSTWLRKHTRVKLLLREAAGNSSVPLYPYKEIEKATNSFSEKQRLGNGAFGTVYAGKLHNDEWVAIKKIRYRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEEGEQILVYEYMPNGTLSEHLQRERGKGLPWTIRLTIAAETSHAIAYLHSAIHPPIYHRDIKSSNILLDYNFKSKVADFGLSRLGMTETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFGRPQSEVNLAALAVDRIRRGSVDEIIDPFLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPTMTEVAEELEHIRRSGWATMEETICLASSIGSTSSSPRNGSEKSLGGGIKFKKPGQGSEGLIVPQKTESFLHPMEMEVKDSSPVSVHDPWSSGHSSPSTNSLLGNVVR. 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00806 693 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 680 IPR044652 GO:0004672
Seca10g00806 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Seca10g00806 693 Gene3D Laminin 192 227 - -
Seca10g00806 693 ProSiteProfiles Protein kinase domain profile. 322 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00806 693 SMART serkin_6 322 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00806 693 Gene3D Transferase(Phosphotransferase) domain 1 398 611 - -
Seca10g00806 693 Pfam Protein tyrosine and serine/threonine kinase 325 594 IPR001245 GO:0004672|GO:0006468
Seca10g00806 693 MobiDBLite consensus disorder prediction 662 693 - -
Seca10g00806 693 ProSitePatterns Protein kinases ATP-binding region signature. 328 351 IPR017441 GO:0005524
Seca10g00806 693 MobiDBLite consensus disorder prediction 613 627 - -
Seca10g00806 693 FunFam Wall-associated receptor kinase-like 14 289 397 - -
Seca10g00806 693 MobiDBLite consensus disorder prediction 613 643 - -
Seca10g00806 693 CDD EGF 191 224 - -
Seca10g00806 693 SUPERFAMILY Protein kinase-like (PK-like) 304 595 IPR011009 -
Seca10g00806 693 Gene3D Phosphorylase Kinase; domain 1 283 397 - -
Seca10g00806 693 MobiDBLite consensus disorder prediction 670 693 - -
Seca10g00806 693 FunFam Wall-associated receptor kinase-like 20 398 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00806 Seca-Chr10 7677092 7681891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00806 31 693 Receptor kinase-like Gene Family AT2G23450 58.798 0.0 765
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca10g00806 PK_Tyr_Ser-Thr 2.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00806 - - gmx:100779130 1021.15