Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00793 ATGATCCAAGAATTGTTGGGTGCTGCTACTCTCATAACAGGAGGGGATCAAAGGAAAATCTCCATTAACGGAGGAGGAGCACTTCTCCTTCCATCCACAACAACATCTCCTTCTTCTCCTTCTCCTTCTCCTTCTCCTTCCATTACCAACACCACTTCTACACCTACCACCACCTCATCAAATTCTGAAAATCAAAACTTGAGGTGCCCGCGTTGTGATTCATCCAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACATGTCGCCGTTACTGGACAAAAGGAGGCGCTCTCAGGAACGTTCCTATCGGCGGTGGCTGCCGGAAAAACAAGAGCTCCGGCGTGTCCAACACGGTGGCAAAGTCAAGCGCAACAAAGATGAAAGCAGTGGCATCTGAGCTTGGAAGATCTACTTCAGGTCATGGCTATGAACACCATGAGGTTCCACCAAATCCAATCCTGTGGGGTTCACCACAGAATACTCATCTCCTGGCTTTACTCAGAGCTGGACAAAATCAAAACCCTAACCCTAACCCTAGTTCCATGTCCATGAATGTAGTCAAGGAAGAAGGGAACTTATTAAGATCCTCTCAGTCTCACATGGTGACTGAGCCATTGCTTGGAAATGGGCTATTGAATCCTAGAAATATCTATGATGCTGTTGGACAAGTTCCTTCACAGTCACAGGGTATGATGTGCACCTCTTTTTGGAGAAACAATCAAGATCAGATTCAACAGCAGAATAATGGGTTTGTACTTGGAGAACTTCAAAGCACTAGTGGAGTTCAAGAACTTTACCACAAGCTCAGGTCATCATCTGTTAATTATTGCAGTGATAACTCATCACCAATGTTTCTGGGAAACATGGCTGCTTCTTCTTCCGCTTCACCTTCTTTATCAAATATTTTGGTGTCATCTTCAGTTCCTGGTGGCAGTGAATTTGGGTGCTGGAATCCATCCTTTACTTGGTCTGATCTTCCCACAACCAATGGTGCATATCCTTAA 1032 0.4506 MIQELLGAATLITGGDQRKISINGGGALLLPSTTTSPSSPSPSPSPSITNTTSTPTTTSSNSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSSGVSNTVAKSSATKMKAVASELGRSTSGHGYEHHEVPPNPILWGSPQNTHLLALLRAGQNQNPNPNPSSMSMNVVKEEGNLLRSSQSHMVTEPLLGNGLLNPRNIYDAVGQVPSQSQGMMCTSFWRNNQDQIQQQNNGFVLGELQSTSGVQELYHKLRSSSVNYCSDNSSPMFLGNMAASSSASPSLSNILVSSSVPGGSEFGCWNPSFTWSDLPTTNGAYP. 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00793 343 MobiDBLite consensus disorder prediction 45 68 - -
Seca10g00793 343 MobiDBLite consensus disorder prediction 31 68 - -
Seca10g00793 343 ProSitePatterns Zinc finger Dof-type signature. 69 105 IPR003851 GO:0003677|GO:0006355
Seca10g00793 343 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 56 263 IPR045174 GO:0003700|GO:0006355
Seca10g00793 343 Pfam Dof domain, zinc finger 65 121 IPR003851 GO:0003677|GO:0006355
Seca10g00793 343 ProSiteProfiles Zinc finger Dof-type profile. 67 121 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00793 Seca-Chr10 7570427 7571458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00793 32 122 C2C2-Dof Transcription Factor Family AT5G65590 64.211 5.51e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca10g00793 zf-Dof 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00793 - - gmx:778100 401.749