Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00785 ATGGATCGTCCGGTGGCGATGGCGACCGGAGCGGGCATGGATATGCCTATCATGCACGATAGCGACCGTTATGATTTCGTCCGTGATATCGGGTCAGGGAATTTCGGCGTCGCTAGGCTCATGAGGGACAAACACACCCAAGAGCTTGTTGCTGTCAAGTATATCGAACGTGGAGATAAGCTTTTTCCTATATGTTATTGTGTGTTGCAGATTGATGAAAATGTGAAGAGAGAAATCATTAATCACAGGTCTCTCAGACATCCTAACATTGTTAGGTTTAAGGAGGTCATTTTAACACCTACTCATCTGGCCATTGTAATGGAATATGCATCTGGAGGAGAACTATTTGAGCGGATATCCAAAGCAGGGCGTTTTAATGAGGATGAGGCTCGGTTCTTCTTTCAACAACTCATATCTGGGGTCAACTATTGTCATGCAATGGAAGTATGTCACCGGGACCTGAAGTTGGAAAACACTTTGTTGGATGGAAGCGCAGCACTTCAGTTGAAGATATGTGATTTTGGATACTCCAAGGTAAGGTTTTCTTTGTCTCACTGGCTTTTTGTGTCTTCAGTGTTTCATTCACAACCAAAGTCAACTGTGGGAACTCCAGCATATATTGCTCCAGAAGTATTGCTGAAGCAAGAGTATGATGGCAAGATTGCTGATGTCTGGTCATGTGGAGTAACCTTATATGTGATGCTAGTGGGAACGTATCCTTTTGAAGATCCTAATGATCCAAAGGATTTCCGGAAGACAATTCAGAGGGTTCTCAGTGTCCAGTATTCCATTCCAGACTCTGTTCAAATATCTCCTGAATGTCGCCACCTTATCTCAAGGATCTTTGTTTTCGACCCTGCTGAGAGAATCACCATTCCTGAAATATTGAAAAATGAATGGTTTCTGAAGAATAATCCCGCTGACTTGATGGATGAAAAGATGTTGAGCAACCATTTTGAAGAGCCAGATCAGCCCATGCAGAGCATGGATACAATCATGCAGATAATTTCAGAAGCTACCATACCAGCAGCTGGGACCTATTCCTTAGACCAATTTATGGCTGATAACATTGATGTAGATGATGATATGGATGAATTAGACTCTGACTTTGAGCTTGATGTAGATAGCAGTGGGGAGATAGTGTATGCCATGTAA 1155 0.4277 MDRPVAMATGAGMDMPIMHDSDRYDFVRDIGSGNFGVARLMRDKHTQELVAVKYIERGDKLFPICYCVLQIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERISKAGRFNEDEARFFFQQLISGVNYCHAMEVCHRDLKLENTLLDGSAALQLKICDFGYSKVRFSLSHWLFVSSVFHSQPKSTVGTPAYIAPEVLLKQEYDGKIADVWSCGVTLYVMLVGTYPFEDPNDPKDFRKTIQRVLSVQYSIPDSVQISPECRHLISRIFVFDPAERITIPEILKNEWFLKNNPADLMDEKMLSNHFEEPDQPMQSMDTIMQIISEATIPAAGTYSLDQFMADNIDVDDDMDELDSDFELDVDSSGEIVYAM. 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00785 384 Gene3D Phosphorylase Kinase; domain 1 1 109 - -
Seca10g00785 384 PANTHER SERINE/THREONINE KINASE 23 324 - -
Seca10g00785 384 ProSiteProfiles Protein kinase domain profile. 24 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00785 384 FunFam Serine/threonine-protein kinase SRK2E 15 109 - -
Seca10g00785 384 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Seca10g00785 384 Gene3D Transferase(Phosphotransferase) domain 1 110 308 - -
Seca10g00785 384 FunFam Serine/threonine-protein kinase SRK2E 110 309 - -
Seca10g00785 384 SUPERFAMILY Protein kinase-like (PK-like) 22 337 IPR011009 -
Seca10g00785 384 Pfam Protein kinase domain 24 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00785 384 SMART serkin_6 24 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00785 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00785 Seca-Chr10 7499909 7505926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00785 23 304 CBL-interacting serine-threonine protein kinases AT5G25110 43.617 2.95e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca10g00785 Pkinase 7.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00785 K14498 - gmx:100783967 631.328