Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00783 ATGGAACTGAGCTTGGATTTGAGTTTGGCTTTTGTCCCCAAAACCGTTTCCCTATTTCTTGGCGACGTTTCTCGGAGCAGAGATAACTCTGAGAAACTTGCCATGCTTGAGGACTTTATCCAGAGATTGGAGGATGAAATGAGGAAGGTTGAGGCTTTCAAACGCGAGCTCCCTCTTTGCATGCTCCTCATAAACGATGCCATAGCAAAATTGAAGGAGGAAAAACTACGGTGTATTGGAATGCAAGATCCACCTGTAACTGAGGAAGAATTCATGCCGTTGAAGACTAGTTATGGAGGAAATGGAAAAGGACCTTCAACCATGGGAAAAGAAAGCTGTGACAAGAAGAATTGGATGAGCTCAGTTCAGCTATGGAACACTGGAACCAAATTGAAGGGTGGAGAAAGTGTTCAACAAGTGGATCAGAAGAACGATAGTGGAGGAGCATTTATCTCATTTAATGGCAATTCATTTGTCCCCAAAGAGGTTTCAAAAGTTCCAAGCTTTAGTTTGATGAGTCCAGCTTCTGAACTGAGCCGTAGCAATTCCAAGAGTGGTTGTGGAGGTAGTAGTTCTGGCTCTTCTTTGCTTCGCGTTGAGATACAGAGTCAACCACAACCACCGCAACATCTGCAGCAGAATCCAAGGAAACAAAGGCGATGCTGGTCGCCGGAGCTTCATCGGCGTTTTGTTGACGCGCTTCAACAACTTGGTGGAGCACAAGTGGCCACTCCTAAACAGATTAGAGAACTGATGCAGGTGGAAGGCCTCACAAATGATGAAGTGAAAAGCCACTTGCAAAAGTACAGGCTTCATATTAGAAGATTCCCAGTTGACCAGACTAATAATGGCTTATGGATGGCACAAGATCAATGTGGAGATAAATCAAAGGGGAACCTATCACAGTCTGGTTCTCCACAAGGTCCTCTTACACCTCTTGTCTTGGGAGGGTCTGTTAAGGGTCTCTCAAGTCCTGGCCGAAATAGTATGGATGCAGAAGATGAGCAATCAGATTGCCGTAATTGGAAAGGTGGGATCCAGCAGCAACTAGAAGCTGATAACCAGAGCCTCTAA 1074 0.4525 MELSLDLSLAFVPKTVSLFLGDVSRSRDNSEKLAMLEDFIQRLEDEMRKVEAFKRELPLCMLLINDAIAKLKEEKLRCIGMQDPPVTEEEFMPLKTSYGGNGKGPSTMGKESCDKKNWMSSVQLWNTGTKLKGGESVQQVDQKNDSGGAFISFNGNSFVPKEVSKVPSFSLMSPASELSRSNSKSGCGGSSSGSSLLRVEIQSQPQPPQHLQQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVEGLTNDEVKSHLQKYRLHIRRFPVDQTNNGLWMAQDQCGDKSKGNLSQSGSPQGPLTPLVLGGSVKGLSSPGRNSMDAEDEQSDCRNWKGGIQQQLEADNQSL. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00783 357 Gene3D - 216 273 - -
Seca10g00783 357 MobiDBLite consensus disorder prediction 288 309 - -
Seca10g00783 357 FunFam Myb family transcription factor 216 274 - -
Seca10g00783 357 NCBIfam myb-like DNA-binding domain, SHAQKYF class 217 272 IPR006447 GO:0003677
Seca10g00783 357 SUPERFAMILY Homeodomain-like 215 275 IPR009057 -
Seca10g00783 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 342 IPR044787 GO:0003700|GO:0006355
Seca10g00783 357 MobiDBLite consensus disorder prediction 92 113 - -
Seca10g00783 357 MobiDBLite consensus disorder prediction 288 338 - -
Seca10g00783 357 MobiDBLite consensus disorder prediction 175 194 - -
Seca10g00783 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 274 IPR017930 -
Seca10g00783 357 Pfam Myb-like DNA-binding domain 219 270 IPR001005 -
Seca10g00783 357 Coils Coil 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00783 Seca-Chr10 7461361 7462968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00783 1 267 G2-like Transcription Factor Family AT4G37180 40.357 3.06e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca10g00783 Myb_DNA-binding 1.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00783 - - pvu:PHAVU_002G021400g 476.863