Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00781 ATGTCATCATCATCCAATTCGCCGTGCGCGGCGTGTAAATTTCTGAGGCGGAAATGCACGCAAGAGTGCGTGTTTGCACCGTACTTTCCACCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTCGGTGCGAGCAACGTGGCGAAACTGCTCAACGAGCTCAACACCGCGCAGCGAGACGACGCCGTAAAGTCCCTGGCTTACGAGGCAGAGGCGCGGCTGAGGGACCCTGTGTACGGCTGCGTGGGCCTTATCTCCGTCCTCCAACACAAGCTGAGGCAGATCGAGGTGGAGCTCAACAATGCGAAGAAGGAGCTTGCAACTTATATTGGGCCCCAGGCTCTGCAAGGCATGCCCACCACTATTCTCCAACAACACCCCAACAACCCTTTTGCCTCTTCCCTCTACCCTTATAACGGTAACATGCCGGCAGTGACTGCGGGTACACAGTTGATGATTCGGGATCCTCAGCCGCAGCAACATCAGATCTTGGAAGCTCAGCAATTGGCTGTGGCTGTGGCCGCAAGAGAGCAGCAGGAGATGTTTAGGAGCTACGAGCATCAACAGCAACAAGAGTTTCTGAGGTTCAGTGGTGGGTTCGAGGTGGGTTCGGTTTCTTCTGGTGGTGGGTTCAGCCAGGTGTCCCCAGCTGCTGCTGCTTCAGCTGATCAATTGTCTCCCTCTTTAGCTTTGGGATCCTTCGACAACACATACCATATGCAGCAACCACAACAAGGAGAACCTCATCCTCATCCTCATCATCATCACCCTCACCCTCACCCTCACCCCCACCATCTTCCACTTCAGGCACAGCTACTGCTCCCTCCTCAGCAGAAGCAAGCACAGTCACAAACCCAGCAGCCACAACTGTCCCATCACCAGCAACAGTCCGAAAGCGAGGAGTGTAGGAGTGTCGGTCCATCTTGTTGA 936 0.5481 MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNTAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIEVELNNAKKELATYIGPQALQGMPTTILQQHPNNPFASSLYPYNGNMPAVTAGTQLMIRDPQPQQHQILEAQQLAVAVAAREQQEMFRSYEHQQQQEFLRFSGGFEVGSVSSGGGFSQVSPAAAASADQLSPSLALGSFDNTYHMQQPQQGEPHPHPHHHHPHPHPHPHHLPLQAQLLLPPQQKQAQSQTQQPQLSHHQQQSESEECRSVGPSC. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00781 311 Coils Coil 87 107 - -
Seca10g00781 311 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Seca10g00781 311 MobiDBLite consensus disorder prediction 241 311 - -
Seca10g00781 311 MobiDBLite consensus disorder prediction 275 311 - -
Seca10g00781 311 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Seca10g00781 311 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00781 Seca-Chr10 7439883 7443743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00781 3 241 AS2 family AT5G66870 52.555 2.61e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca10g00781 LOB 2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00781 - - gmx:102664012 382.874