Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00780 ATGCGCTGGTTTCCCACCCTCATTTTCTCCCATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCATCTTCATCTTCTCCTTCTTCATCCTCTTCTCCGACAATTCTAAAATCCTCCCCGTCCACCTCCTCCCTCCCTGACCACAGAAAGAACACCCGCAGCACGTGGCTCTTCGGCAGTGGCAAAAGATCCACGCGCTCCAGGAAGCTCCGCCACGTCGATCACGATGACTCAGAATACGACGCCGTCGCGGCGCCTTTCTCTCGTTCCCCAAGCACCCGCAGCTACATTCGTTCCAACACCAACACCGCCACCTCCTCCGTTGCGCCTCAGCCCTTGCCATTGCCGGAACTAGCGTCCCCTGCGCAACATCGCCAAAGAGACGCCGATTGCCGTTTGCCGTCGCCCAAAGACGCTGCCTCCGCCGCTCCCTGTAGAGGACCAGAACCTGATGGCGCTGTGGACGCTTCTCTCACCACCGGCTTTAGGATGCGCAGTGTTTTTGCTAGGCAAGAGACAAGAAGGAATACAGAGCAGGTGGAGACAAGGTCACCTGGTAGTGGGATGGTGCGTCAAGATGCGAGTGGTTCTGCAACTTCAAGCAGTGCTCGAGGAAATAACTTCTGCATCAGTGTCCCTGCTAGGAGTGCTCCTAGCAGTCCCTTTGCCAGCCCTACAATCAGCCCAAAGAATACCCAAAACGATGATTTTGTGCCATATTATTATGTGTCACCCAAAGGAAATCAGTTCTGGTCTGCACCAGAGATGCCCACCTCTCAAGCATTAGCTGGCCAACCACCTCCTGCTTTCTTTGATTTTTCAGCATTAGGCACTGATAATGCTTCTTCTCCCCACCCTAAAAGCCCAACTAAACCTTCTTCACCCATGCCCAGGTTATCCTTTGAGACTTCAACAGCACGTCGTGAAAGTATTGCTCCTCTCACTGTTCACCCTTTACCATTGCCTCCTTGGGCTGGGTCGGCCTTACCTTCACCGTCTGCTACATTTTCCCAACCTGTGCCTCGGACAGAACCCTTGTCAATGAAAAGCCAATGGCAAAAAGGGAAACTTATAGGGAGAGGTACTTTTGGAAGTGTTTATGTTGCCACCAACAGAGAAACTGGAGCATTGTGTGCAATGAAGGAAGCAGAAATATTTTCTGATGATCCAAAATCTGCAGAGTGTATAAAGCAGTTAGAGCAGGAAATTAAAGTTCTTAGCAATCTGAAACATCCAAATATTGTGCAGTATTTTGGTAGTGAAATAGTAGAAGACAAGTTTTATATTTATTTGGAATATGTCCATCCCGGTTCCATAAATAAATACGTTCGCGAACATTGTGGTGCGATAACAGAATCTGTTGTTCGGAATTTCACGCGCCATATTCTTTCGGGGCTGGCTTACTTGCATAGCAAGAAAACAATTCATAGGGACATCAAAGGGGCCAACTTGCTTGTTGATTCTTCAGGTGTTGTTAAGCTTGCTGACTTTGGGATGGCCAAGCATTTAACTGGACATGCTGCTGATCTTTCTTTGAAGGGAAGTCCATACTGGATGGCTCCAGAGCTTATGCATGCGGTTATGCAAAAAGATAACAGCTCTGATCTAGCATTTGCTGTGGATATTTGGAGTTTGGGCTGTACAATTATTGAAATGTTCACGGGGAAGCCTCCTTGGAGTGAGTACGAAGGAGCCGCAGCCATGTTTAAGGTTATGAAGGATACCCCTCCTATACCTGAAACATTGTCACTAGAGGGTAAAGATTTCCTAAGGCTTTGCTTTATAAGAAATCCAGCAGAGCGTCCAAGTGCTTCAATGTTACTAGAGCATCGATTTCTGAAAAACTTGCTACCGCCAGATGTTCCATCTTCCTCCCACCTGTATAACGCAACAAACTTGATGGATAAACCCCTTAGTCCCACAGGGTTATCTGAAAACAAACCTGATCAGATTTATATTCCCAGTGCACAGACTGCAAGAGGGAAATTAGCCACTGATAGTTTCTTTCATCTTTGTTGA 2040 0.4721 MRWFPTLIFSHSSSSSSSSSSSSSSSSSASSSSPSSSSSPTILKSSPSTSSLPDHRKNTRSTWLFGSGKRSTRSRKLRHVDHDDSEYDAVAAPFSRSPSTRSYIRSNTNTATSSVAPQPLPLPELASPAQHRQRDADCRLPSPKDAASAAPCRGPEPDGAVDASLTTGFRMRSVFARQETRRNTEQVETRSPGSGMVRQDASGSATSSSARGNNFCISVPARSAPSSPFASPTISPKNTQNDDFVPYYYVSPKGNQFWSAPEMPTSQALAGQPPPAFFDFSALGTDNASSPHPKSPTKPSSPMPRLSFETSTARRESIAPLTVHPLPLPPWAGSALPSPSATFSQPVPRTEPLSMKSQWQKGKLIGRGTFGSVYVATNRETGALCAMKEAEIFSDDPKSAECIKQLEQEIKVLSNLKHPNIVQYFGSEIVEDKFYIYLEYVHPGSINKYVREHCGAITESVVRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGHAADLSLKGSPYWMAPELMHAVMQKDNSSDLAFAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMKDTPPIPETLSLEGKDFLRLCFIRNPAERPSASMLLEHRFLKNLLPPDVPSSSHLYNATNLMDKPLSPTGLSENKPDQIYIPSAQTARGKLATDSFFHLC. 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00780 679 Pfam Protein kinase domain 360 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00780 679 MobiDBLite consensus disorder prediction 7 69 - -
Seca10g00780 679 ProSiteProfiles Protein kinase domain profile. 359 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00780 679 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 15 633 - -
Seca10g00780 679 Gene3D Transferase(Phosphotransferase) domain 1 355 644 - -
Seca10g00780 679 ProSitePatterns Protein kinases ATP-binding region signature. 365 388 IPR017441 GO:0005524
Seca10g00780 679 MobiDBLite consensus disorder prediction 1 212 - -
Seca10g00780 679 MobiDBLite consensus disorder prediction 187 212 - -
Seca10g00780 679 MobiDBLite consensus disorder prediction 264 314 - -
Seca10g00780 679 MobiDBLite consensus disorder prediction 95 117 - -
Seca10g00780 679 SUPERFAMILY Protein kinase-like (PK-like) 340 653 IPR011009 -
Seca10g00780 679 FunFam Mitogen-activated protein kinase kinase kinase 5 356 657 - -
Seca10g00780 679 SMART serkin_6 359 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00780 Seca-Chr10 7417953 7422241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00780 43 676 MAP Kinase Kinase Kinase AT5G66850 52.655 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca10g00780 Pkinase 1.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00780 - - psat:127120353 914.835