LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g00760	ATGTCGCAACGATCGGTGCCGGCGCCGTTCTTGACGAAGACGTATCAGTTGGTGGAGGATCCGGCGACGGACGATGTGATATCATGGAGTGAGAGTGGCAACACTTTTGTTGTGTGGAAACATGCAGATTTTGCAAAGGATTTGCTTCCTAATTACTTTAAGCACAACAACTTCTCTAGCTTTGTCCGCCAGCTCAACACCTATGGATTCCGAAAGATCGTGCCAGACAAATGGGAATTCGCGAACAAGCATTTCAAGCGAGGCCAAAAGGAGCTTCTCTCTGAGATCAAACGCCGCAAGACCGTGACCCAACCGTCGCAACAGCCCCCGGAGCCCGGAAATTCCGGCGCCGACGGCAACTCTCCGTCGAACTCCGGTGGCGATGACGTGGGATCCAGCTCGACGTCGACCTCATCCTCCGATTCGAAGAATCAAGGAACATTGGAGACAACGGCTCCTCAGTGCGCGAATTTATCGAGCGAGAACGAGAAACTGAAGAAGGATAACGAAACGCTAAGCTGGGAGCTGGCACGTGCGAAGAAGCAGTGCGATGAGCTAGTAGCTTTTCTGAGGGACCGTATGAAAGTGGGTCCCGATCAGATAGATCGCATAATGCGGCAAGAAAACTGTGGATATGATGAAAGCGCGGTAGGTGAAGTTGAAGGTGAAGGTGGAGGAAAAGAGTGTTTGAAACTGTTTGGTGTTTGGTTGAAAGATGAGACTTTTACAGAGAAAAGAAACAATCACAAGAGAGGCCGTGAAGACCAAATGGGCTTCGGTGGGCCTCATGCCACTAAGGTGTCAAAGACTGTTGTTGACTTTGGTGTTATGATGAAGAGCGGCAAGGTTTGCAACTGA	858	0.5023	MSQRSVPAPFLTKTYQLVEDPATDDVISWSESGNTFVVWKHADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANKHFKRGQKELLSEIKRRKTVTQPSQQPPEPGNSGADGNSPSNSGGDDVGSSSTSTSSSDSKNQGTLETTAPQCANLSSENEKLKKDNETLSWELARAKKQCDELVAFLRDRMKVGPDQIDRIMRQENCGYDESAVGEVEGEGGGKECLKLFGVWLKDETFTEKRNNHKRGREDQMGFGGPHATKVSKTVVDFGVMMKSGKVCN.	286

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g00760	285	Gene3D	-	2	101	IPR036388	-
	Seca10g00760	285	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	5	209	IPR027725	-
	Seca10g00760	285	PRINTS	Heat shock factor (HSF) domain signature	10	33	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca10g00760	285	PRINTS	Heat shock factor (HSF) domain signature	48	60	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca10g00760	285	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca10g00760	285	SUPERFAMILY	"Winged helix" DNA-binding domain	7	99	IPR036390	-
	Seca10g00760	285	Pfam	HSF-type DNA-binding	10	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca10g00760	285	ProSitePatterns	HSF-type DNA-binding domain signature.	49	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca10g00760	285	MobiDBLite	consensus disorder prediction	99	160	-	-
	Seca10g00760	285	MobiDBLite	consensus disorder prediction	98	166	-	-
	Seca10g00760	285	Coils	Coil	155	182	-	-
	Seca10g00760	285	FunFam	Heat stress transcription factor B-4	2	100	-	-
	Seca10g00760	285	SMART	hsfneu3	6	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g00760	Seca-Chr10	7166673	7169403	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g00760	2	285	HSF	AT4G36990	52.203	1.44e-81	246

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Seca10g00760		HSF_DNA-bind	1.9e-33	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g00760	K09419		-	gmx:100791543	404.06