Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00749 ATGGATGAGGACATACTCAAAACTTCACCCAGTGATGACAGCAGCATGGACATGATGGCAATGATGATGCAAATGGAAAAGTTCCCTGAATTATGTGATCCCTTTTATAACACTACTCTCAATTACACAGACAACGAATTCTCAGGTGGAAGCTCCACTACCACCACTCTCCCTGTTTTCTCCAACGTTAACCAAAATGTAACTCCACCACCTTCCTCTGCTAATTTCGTTAACAATCCTCTCCAACAACCCATGACACTTCCCGCTTCAATTTCCTACCCTGTATCCTCAGAGAAAAAGAGTTCTATTGCTGCGATGAGAGAGATGATTTTCCGAGTAGCAGTGATGCAGCCTATTCATATAGACCCGGAATCTGTTAAGCCACCAAAGAGACGGAATGTGAAGATTTCAAAGGATCCTCAGAGTGTGGCAGCGAGGCACAGGAGGGAAAGAATAAGCGAGAGAATAAGGATCCTGCAGAGATTAGTCCCTGGTGGGACGAAAATGGACACGGCTTCTATGTTAGATGAAGCCATACACTATGTGAAGTTCTTAAAGAAACAAGTGCAGACGCTGGAACAGGCAGGGGCAACTAGATCGGTACCCTTAAATGTTGTTGGCTTCCCAGGTGTAAATTATTCTGCTTTAGTAAGGGGTTGCCAACCTAGTCAAATGCTGGCTTCTAATTCTAAACAAATCTTCAGTTGA 708 0.4393 MDEDILKTSPSDDSSMDMMAMMMQMEKFPELCDPFYNTTLNYTDNEFSGGSSTTTTLPVFSNVNQNVTPPPSSANFVNNPLQQPMTLPASISYPVSSEKKSSIAAMREMIFRVAVMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGATRSVPLNVVGFPGVNYSALVRGCQPSQMLASNSKQIFS. 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00749 235 Gene3D - 135 201 IPR036638 GO:0046983
Seca10g00749 235 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 50 209 IPR045843 GO:0003700|GO:0006355
Seca10g00749 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 197 IPR036638 GO:0046983
Seca10g00749 235 SMART finulus 142 191 IPR011598 GO:0046983
Seca10g00749 235 CDD bHLH_AtIND_like 137 193 - -
Seca10g00749 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Seca10g00749 235 Coils Coil 175 195 - -
Seca10g00749 235 FunFam BHLH transcription factor 139 202 - -
Seca10g00749 235 Pfam Helix-loop-helix DNA-binding domain 146 185 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00749 Seca-Chr10 7064149 7064856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00749 12 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 54.902 4.94e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca10g00749 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00749 - - gmx:100796649 280.026