Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00747 ATGGAGTGGGTTCGTGGACAATCCCTTGGTAGTGGAAGCTTCGCCACTGTCAATTTAGTTATACCCACTAACGGTTCTACTTCTACACCTCCCACAGCCGTCAAGTCCTCCAACGTTCACACCTCGTATTTGCTCAAGAATGAGGAACATGTCCTCAATCGCATAGGATGTTGCCCGCAAATTATTAACTGTTTTGGCCACGATCAAACCTTAGAAAACGGTGAAGAGTACTACAATCTGTTTCTCGAATACGCTTCTGGTGGCACTCTCGCTGATCAGCTCAAGAACCACGGTGGCCGGTTCCCGGAATCTCTCGCTCGCCGATACACGAGGTCCATCGTTGAAGGTCTCAAGCACATTCATGCCAATGGTTTCGTCCACTGCGACGTGAAGCCCCAAAACATCCTCGTTTTCGACAATGGCGATGTCAAGATTGCGGACTTTGGGCTTGCGAAGGAAACAGGGGAGAAAGAGAAACAGAGTCAGAGGTGGGAGTTCAGGGGAACTCCTATGTTTATGTCGCCGGAATCGGTGAACGACAACGAATATGAATCACCGGCGGATATATGGGCTCTGGGCTGCGCCGTCGTGGAGATGGTGACCGGAAAACCCGCCTGGAACGTCCGCATCGGGTCGAATATATGGTCGTTGTTGATTCGAATTGGGGTGGGAGAAGAATTGCCGTTGATTCCAGATGAAATGTCAAACCAGGGGAAGAATTTTCTAGAGAAGTGTTTCGTGAAGGATCCAAAGAAGAGATGGAGCGCAGAGATGCTTTTGAAGCATCCCTTTCTCGCCGATGACACTGTTTCATTTAATGATTCATTGCCATCATCATCTCCAAGAACACACTTCGATTTCCCTCATTGGGCTTCCACTCTAACGGCTTCACCGGATTCTGACGAATGGCGTGAATTTGTGCCTTTGCCGGGAAACCGAATCCGGCGGCTGGTCACGGATCAGGGACCAATGGATTGGTCAGAATCGGATAGCTGGACTAATGGTGTGGATATAGCTGAGTATACTATATGGGCTCTGGCCCGTAAAACTCACATCATATGCAGGCTTGGAGGTTCGTTAACAAAAGAGCTCATTTGGTTAACCCGCGGGCCTAACGGATTTAACCTGCAAAGTTTGTGGGGTTCTTTTCTTGTGTTGTGTTCTGTCTCTTCTCAACTCAATGACTTGTATTGGTTTTTTAAGCTCCAAAAACCCATTATGCTAAATCTGAATTCCAGACTAGCTAGAGTAGGAGCTTCGATCGTCAAACAACTCTGCACAGGGAATTATATATCCATGTGCAGAGCAGGATATGTTCGAAGCGCCAGAAATCATTACCTGCAACCTTCGTTTCAAGAGCATTCATTTACTAAGTTATACAAGGGAGCCATAATTGAGAAGCATAATTTCCTTTCAACAACGGCTACTAACAACACTACTGAGGATGGGAGTGAAGAAAAAGAAATGGCCCCATACCTTCATCAAAGTTTGAATGACAATACACATTTGTATTCCGCCCCTTACACTTTTGAGACAACTTTATGCAGGATATCTGTAACTTTTATTGATAAGGATGGCGAGGAAAAGCTTATCAAAGTCCCTGTTGGAATGTCCATGTTAGAAGCTGCTCATGAAAATGACATTGAACTTGAAGGCAAGAGCTTTGATATTAAAGACGTAGAATATTACAATAAATTGGAAGATCCAACTGACGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACATCACGACTAGGTTGCCAAGTGATCGCTAAACCTGAACTTGATGGAATTCGTTTAGCCATTCCTGCTGCCACTCGAAACTTTGCTGTTGATGGTTATGTGCCTAAGCCACACTAA 1872 0.4541 MEWVRGQSLGSGSFATVNLVIPTNGSTSTPPTAVKSSNVHTSYLLKNEEHVLNRIGCCPQIINCFGHDQTLENGEEYYNLFLEYASGGTLADQLKNHGGRFPESLARRYTRSIVEGLKHIHANGFVHCDVKPQNILVFDNGDVKIADFGLAKETGEKEKQSQRWEFRGTPMFMSPESVNDNEYESPADIWALGCAVVEMVTGKPAWNVRIGSNIWSLLIRIGVGEELPLIPDEMSNQGKNFLEKCFVKDPKKRWSAEMLLKHPFLADDTVSFNDSLPSSSPRTHFDFPHWASTLTASPDSDEWREFVPLPGNRIRRLVTDQGPMDWSESDSWTNGVDIAEYTIWALARKTHIICRLGGSLTKELIWLTRGPNGFNLQSLWGSFLVLCSVSSQLNDLYWFFKLQKPIMLNLNSRLARVGASIVKQLCTGNYISMCRAGYVRSARNHYLQPSFQEHSFTKLYKGAIIEKHNFLSTTATNNTTEDGSEEKEMAPYLHQSLNDNTHLYSAPYTFETTLCRISVTFIDKDGEEKLIKVPVGMSMLEAAHENDIELEGKSFDIKDVEYYNKLEDPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGIRLAIPAATRNFAVDGYVPKPH. 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00747 623 ProSitePatterns Protein kinases ATP-binding region signature. 9 35 IPR017441 GO:0005524
Seca10g00747 623 SUPERFAMILY Protein kinase-like (PK-like) 3 295 IPR011009 -
Seca10g00747 623 SMART serkin_6 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00747 623 Pfam Protein kinase domain 5 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00747 623 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 295 - -
Seca10g00747 623 Gene3D Transferase(Phosphotransferase) domain 1 2 297 - -
Seca10g00747 623 FunFam Mitogen-activated protein kinase kinase kinase 17 2 294 - -
Seca10g00747 623 Gene3D - 513 618 IPR012675 -
Seca10g00747 623 ProSiteProfiles Protein kinase domain profile. 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00747 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Seca10g00747 623 CDD STKc_MAPKKK 2 265 - -
Seca10g00747 623 SUPERFAMILY 2Fe-2S ferredoxin-like 518 607 IPR036010 GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00747 Seca-Chr10 7034638 7040375 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00747 1 334 MAP Kinase Kinase Kinase AT4G36950 53.982 1.16e-119 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca10g00747 Pkinase 5.9e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00747 - - aprc:113869133 517.309