Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00746 ATGGAGTGGGTTCGTGGACAGTCTCTTGGCAGTGGAAGCTTCGCCACTGTCAATTTAGTTATACCCACTAACGGTTCTACTTCTACACCTCCCACAGCCGTCAAGTCCTCCAACGTTCACACCTCGTATTTGCTCAAGAACGAGGAACATGTCCTCAATCGCATAGGATGTTGCCCGCAAATCATCAAGTGTTTTGGCCACGACCAAACCTTAGAAAACGGTGAAGAGTGCTACAATCTATTTCTTGAATACGCTTCTGGTGGCACTCTCGCTGATCAGCTCAAGAACCACGGTTGCCGGTTCCCGGAATCCCTCGTTCGCCGATACACGAGGTCCATCGTCGAAGGTCTCAAGCACATTCATGCCAATGGTTTTGTCCACTGCGACGTGAAGCTCCAAAACATCCTCGTTTTCGAGAATGGCGACGTTAAGATTGCGGACTTTGGGCTTGCGAAGGAAACAGGGGAGAAACAGAGTCAAGGGTTGGAGTTCAGGGGAACTCCCATATTTATGTCGCCGGAATCAGTGAACGATAATGAGTACGAGTCACCGGCGGATATATGGGCTCTGGGCTGCGCCGTCGTGGAGATGGTGACCGGAAAACCTGCCTGGAACGTCCGCAGCGGGTCAAATATATGGTCGTTGTTTATGCGAATTGGGTTGGGAGATGAATTGCCGTTGATTCCTGATGAATTGTCAAAGGAGGGGAAGGATTTTCTGGAAAAGTGTTTTGTGAAGGATTCAAAGAAGAGATGGAGTGCAGAGATGCTTTTGAAACACCCTTTTGTCGCTGACGACACTGTTTCATTCATTGATTCATTGCCATTGCCATCCCCATCACCGACAACCCACTTCGATTTCCCGCATTGGTCTTCCACTGCAACGGCTTCGCTTCCCTCTTCTCTGGGTTCCGACGAATGGCGTGATCGGGACATTGGGCCTTCACCGACGGACCGGGTCCGTCGCCTGGTCACGGATGACGGACCAACGGATTGGTCAGAATCGGATAGCTGGATTATTGTTAGGTCATAG 1032 0.5048 MEWVRGQSLGSGSFATVNLVIPTNGSTSTPPTAVKSSNVHTSYLLKNEEHVLNRIGCCPQIIKCFGHDQTLENGEECYNLFLEYASGGTLADQLKNHGCRFPESLVRRYTRSIVEGLKHIHANGFVHCDVKLQNILVFENGDVKIADFGLAKETGEKQSQGLEFRGTPIFMSPESVNDNEYESPADIWALGCAVVEMVTGKPAWNVRSGSNIWSLFMRIGLGDELPLIPDELSKEGKDFLEKCFVKDSKKRWSAEMLLKHPFVADDTVSFIDSLPLPSPSPTTHFDFPHWSSTATASLPSSLGSDEWRDRDIGPSPTDRVRRLVTDDGPTDWSESDSWIIVRS. 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00746 343 ProSitePatterns Protein kinases ATP-binding region signature. 9 35 IPR017441 GO:0005524
Seca10g00746 343 SUPERFAMILY Protein kinase-like (PK-like) 3 301 IPR011009 -
Seca10g00746 343 SMART serkin_6 3 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00746 343 MobiDBLite consensus disorder prediction 304 329 - -
Seca10g00746 343 ProSiteProfiles Protein kinase domain profile. 3 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00746 343 Pfam Protein kinase domain 5 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00746 343 FunFam Mitogen-activated protein kinase kinase kinase 17 2 294 - -
Seca10g00746 343 CDD STKc_MAPKKK 2 263 - -
Seca10g00746 343 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 292 - -
Seca10g00746 343 Gene3D Transferase(Phosphotransferase) domain 1 2 288 - -
Seca10g00746 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Seca10g00746 343 MobiDBLite consensus disorder prediction 298 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00746 Seca-Chr10 7027509 7028540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00746 1 342 MAP Kinase Kinase Kinase AT5G67080 51.117 2.00e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca10g00746 Pkinase 2.1e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00746 - - gmx:100797177 496.508