Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00743 ATGGCAGATGACGAAGGAAGTGCATCCAGGAAGCGAAGGACCAGAGGACCTGAGGCCACCGCCCGCAGCCAAGCCTTGGAGCGCCTCAAGGCCCGCCTTGGCGGTGGTCGCAGATCTGACCCCGACGGACCCCAAATCAGGTTAGAAAACCCTATCTATGATACAGTTCCCGAGGACGAGTACAACGCCCTCGTTGCCAAGCGCCGCGAACAAGCACGCTCCTTCATCGTCGACGATGACGGTCTCGGTTACGGTGACGAAGGCGAGGAAGAGGATTGGTCCAAAGCTGGCTTCACCCTCTCCTCCGACGAATCCGACGGCGAATCGACGAAGCCCAAGCGGAAGAAAGATCCTCAGCCCAAACGGCAATCTTCTTCCTCTTCTGCGCTCTCAGCCGCCGCCGCCATGATGGGCGCGCAGAGGTTGTCGTCCATGTTTACTTCCGCAGTTTTCAAGAAAAGCAGGGACGATAAGGCCTGTGACAGCATCGTCGATGATGTTATCGCGGAGTTCGCGCCGGATGAGACCGATAGACTGAGTCGGAGAAGGCTTCAAGTGGATTCGTCGTCTGGCGCCAACGACGCTCAACGGATTAAGCCATCTGTTGGTGATTCTATCAGAGGTTCTTCGTTGTCCAAAGCTTTTGCAAATGGTGACGCTGAACCGGTTAGGGTTTTTCAGAACAATGGATGCGACTTGGGCTTAGAGCAAAAGTGCGAAGCGGAAGTGAATGAAAATGTAAGTTCGGAAAATGGCCAGGTACCAGTAGAGCAATCTAATGACTGCCCAAGTAATGAGGATTTAGATGAGGAGAAAGTGGCGAAGGACGTTGAAATAGAAGTGAAACAAGATGCGAAAAAGGAAGTGTTCACTTTGAATGCCAAAGTTACAAAAGAGGAGGAGGATCCAGCATTGTGTGCGACTGCTGGTTGGCAAGCAGCGAAGAGTGGTGCCGGCGGAGGAGTGGAGATCAACGCTGCTGATTCGAAGGATGCTTCACATAGCCAACAACACACGGAGTTTAATCTTGAGACAGATGGATCGCTGCCTTTCTACATACTAGATGCCCACGAGGAGTTTTATGGAGCCAATATGGGAACTCTATATTTGTTTGGGAAGGTCAAAACAGGGAATTTGTATCAGAGTTGCTGTGTTGTTGTGAAGAACATGGAGAGGTGTGTATATGCAATTCCAAGTCGGCCTTTGCATTACACTGATGAGATGGTGAATCTTGAGAAAGATGTCCAAGAGTCTCGAATTTCTCCTCAAGATTTCCGTAAAAAGCTGCATGATATGGTATCTGATATAAAGAATGAGATAGCAAAACATCTGGTGGATCTGAGCGTTTCTACCTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGAACGGTCTGAAATTCCTACCGGTGAAAATTATGTGGTGAAAATAAATTACCCATTCAAGGATCCAGTACTTCCAGTAGACCTCAAAGGAGAAAGTTTCTGTGCTCTCCTAGGAACTCGTTGCAGTGCACTCGAGCTTTTTCTGATTAAAAGAAAGATAAAGGGGCCTTCATGGCTACAGGTTTCAAACTTTTCTACCCGCTCAGCTTCTCAAAGGGTTAGCTGGTGCAAATTTGAAGTGACTGTCGACTCTCCTAAAGACATAAGGATTTCTTCAAATTCTTCAAAATTCACTTTCGAGATTCCTCCTGTGGTTGTCACGGCGATAAACTTGAAAACCACCATAAATGAAAAGCAGAACATAAATGAAATTGTATCAGCATCAGTTGTCTGTTGCAATATGGTTAAGATTGACACTCCTATGTTGGCTTCAGAGTGGAAGAGACCTGGAATGCTGACCCATTTTACTGTTATTCGTAAGCTTGATGGGAATATATTTCCACTGGGATTCAGTAAGGAGGCTACGGACAGAAACATAAAAGCTGGGTCAAATGTTCTGTGTGTTGAAAGCAGTGAAAGAGCTTTGTTAAATCGTTTGATGTTAGAATTACACAAGTTGGATAGTGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATCCCAGGCTTGCAAAGTACCAAGCAGCATGTGGTCTAAACTAGGCCGCCTCAACCGTTCTACAATGCCTAAACTTGATAGAAGAAGCAAAGTTTTTGGTTCTGGAGCTGATCCTGGTATCATGTCTTGCATTGCTGGTCGGCTTCTTTGTGATACATATTTGTGTTCTCGTGACCTATTAAAGGAGGTTAGTTATGCTTTAACTCACCTCGCAAAAACACAGCTGAACAAGTTTCGGAAGGAAGTTGCTCCACATGACGTTCCAAAAATGTTCCAAACAACAAAATCCCTAATGGAGCTTATTGAATATGGTGAAACGGATGCCTGGTTGTCTATGGAACTCATGTTTCATCTGAGTGTTCTCCCGCTCACACGTCAGCTGACTAATATCAGTGGTAATTTGTGGGGAAAAACTCTTCAGGGTGCTCGGGCACAGAGAGTGGAATATTTATTATTGCATGCTTTCCATGCAAAGAAATATATTGTGCCAGACAAGTTTACAAATCATGCAAAAGAAACAAAATTGACCAAACGCAGAGTACATGGTGTTGATGATAGCAACTTTGATGAAGCAGAAATTGATGATGCAAACTACAATAATGATGCTTCTGAACGTGATTATAAGAAAAACAAAAAGGCTTCTTCCTATGCTGGGGGACTGGTTTTAGAGCCAAAGAAGGGTCTATATGACAAATATATATTGCTTCTGGATTTCAATAGTCTTTATCCTTCTATCATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTTCCGGCGGATCTTTTCCTCGTCTACCATCTAGTAAAATAACTGGAGTCTTGCCAGAGTTGCTGAAAAATCTGGTGGAAAGGAGGAGAAAGGTAAAGTCATGGATGAAGACTGCATCTGGTCTTAAAGTTCAGCAGCTGGACATTCAGCAGCAAGCACTGAAGCTTACTGCAAACAGCATGTATGGATGCCTGGGATTTTCCAATTCAAGATTTTATGCGAAACCACTAGCCGAGCTCATAACCCAACAAGGAAGGGAGATATTGCAGAGTACTGTTGATCTTGTTCAAAATAACTTGAATTTAGAGGTGATCTATGGTGATACTGATTCAATAATGATTTACAGTGGACTAGATGATATTGCGAAAGCAAAGGCAATGGCTGGGAAAGTTATTCAAGAGGTCAATAAGAAATATAGATGCTTGGAAATTGATCTTGATGGTTTATATAAGAGGATGCTACTTCTCAAGAAAAAGAAATATGCAGCTGTAAAGGTGCAGTTTAAAGATGGCACCCCATATGAGGTTATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTGGCTAAAGAATTAGGAGATTTTTGCTTGACTCAAATTTTGTCAGGAGGGTCATGTGAAGATGTTGTTGAATCAATTCACAGCTCTCTCATGAAGGTAAATTGTGATGTGTTGCAGCATCTGTCAGACATTTGTTTATAA 3558 0.4362 MADDEGSASRKRRTRGPEATARSQALERLKARLGGGRRSDPDGPQIRLENPIYDTVPEDEYNALVAKRREQARSFIVDDDGLGYGDEGEEEDWSKAGFTLSSDESDGESTKPKRKKDPQPKRQSSSSSALSAAAAMMGAQRLSSMFTSAVFKKSRDDKACDSIVDDVIAEFAPDETDRLSRRRLQVDSSSGANDAQRIKPSVGDSIRGSSLSKAFANGDAEPVRVFQNNGCDLGLEQKCEAEVNENVSSENGQVPVEQSNDCPSNEDLDEEKVAKDVEIEVKQDAKKEVFTLNAKVTKEEEDPALCATAGWQAAKSGAGGGVEINAADSKDASHSQQHTEFNLETDGSLPFYILDAHEEFYGANMGTLYLFGKVKTGNLYQSCCVVVKNMERCVYAIPSRPLHYTDEMVNLEKDVQESRISPQDFRKKLHDMVSDIKNEIAKHLVDLSVSTFSMAPVKRKYAFERSEIPTGENYVVKINYPFKDPVLPVDLKGESFCALLGTRCSALELFLIKRKIKGPSWLQVSNFSTRSASQRVSWCKFEVTVDSPKDIRISSNSSKFTFEIPPVVVTAINLKTTINEKQNINEIVSASVVCCNMVKIDTPMLASEWKRPGMLTHFTVIRKLDGNIFPLGFSKEATDRNIKAGSNVLCVESSERALLNRLMLELHKLDSDVLVGHNISGFDLDVLLHRSQACKVPSSMWSKLGRLNRSTMPKLDRRSKVFGSGADPGIMSCIAGRLLCDTYLCSRDLLKEVSYALTHLAKTQLNKFRKEVAPHDVPKMFQTTKSLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFTNHAKETKLTKRRVHGVDDSNFDEAEIDDANYNNDASERDYKKNKKASSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSGGSFPRLPSSKITGVLPELLKNLVERRRKVKSWMKTASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHSSLMKVNCDVLQHLSDICL. 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00743 1185 CDD DNA_polB_alpha_exo 565 816 - -
Seca10g00743 1185 Coils Coil 282 302 - -
Seca10g00743 1185 Gene3D Palm domain of DNA polymerase 905 1106 IPR023211 -
Seca10g00743 1185 Gene3D - 351 550 - -
Seca10g00743 1185 MobiDBLite consensus disorder prediction 247 269 - -
Seca10g00743 1185 ProSitePatterns DNA polymerase family B signature. 1054 1062 IPR017964 GO:0000166|GO:0003676
Seca10g00743 1185 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 18 1177 - -
Seca10g00743 1185 MobiDBLite consensus disorder prediction 75 134 - -
Seca10g00743 1185 MobiDBLite consensus disorder prediction 1 58 - -
Seca10g00743 1185 Gene3D - 391 517 - -
Seca10g00743 1185 Pfam DNA polymerase family B, exonuclease domain 381 758 IPR006133 -
Seca10g00743 1185 MobiDBLite consensus disorder prediction 1 18 - -
Seca10g00743 1185 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Seca10g00743 1185 Pfam DNA polymerase family B 824 1178 IPR006134 GO:0000166|GO:0003677
Seca10g00743 1185 MobiDBLite consensus disorder prediction 106 121 - -
Seca10g00743 1185 NCBIfam DNA polymerase (pol2) 52 1177 - -
Seca10g00743 1185 SUPERFAMILY Ribonuclease H-like 346 853 IPR012337 -
Seca10g00743 1185 PRINTS DNA-directed DNA-polymerase family B signature 923 936 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca10g00743 1185 PRINTS DNA-directed DNA-polymerase family B signature 999 1011 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca10g00743 1185 PRINTS DNA-directed DNA-polymerase family B signature 1052 1060 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca10g00743 1185 SUPERFAMILY DNA/RNA polymerases 849 1171 IPR043502 -
Seca10g00743 1185 FunFam DNA polymerase 391 517 - -
Seca10g00743 1185 MobiDBLite consensus disorder prediction 247 262 - -
Seca10g00743 1185 Gene3D - 565 877 IPR036397 GO:0003676
Seca10g00743 1185 Gene3D Helix hairpin bin 964 1015 - -
Seca10g00743 1185 MobiDBLite consensus disorder prediction 182 207 - -
Seca10g00743 1185 Gene3D - 1107 1182 IPR042087 -
Seca10g00743 1185 FunFam DNA polymerase 565 878 - -
Seca10g00743 1185 FunFam DNA polymerase 964 1013 - -
Seca10g00743 1185 SMART polmehr3 565 1066 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca10g00743 1185 Coils Coil 1080 1100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00743 Seca-Chr10 6994664 7006222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00743 1 1172 Core DNA Replication Machinery Family AT5G67100 59.681 0.0 1367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00743 K02320 - gmx:100798779 1739.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00743 10 6994664 7006222 Seca10g00743 10 6994664 7006222 ECH