Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca10g00743 | ATGGCAGATGACGAAGGAAGTGCATCCAGGAAGCGAAGGACCAGAGGACCTGAGGCCACCGCCCGCAGCCAAGCCTTGGAGCGCCTCAAGGCCCGCCTTGGCGGTGGTCGCAGATCTGACCCCGACGGACCCCAAATCAGGTTAGAAAACCCTATCTATGATACAGTTCCCGAGGACGAGTACAACGCCCTCGTTGCCAAGCGCCGCGAACAAGCACGCTCCTTCATCGTCGACGATGACGGTCTCGGTTACGGTGACGAAGGCGAGGAAGAGGATTGGTCCAAAGCTGGCTTCACCCTCTCCTCCGACGAATCCGACGGCGAATCGACGAAGCCCAAGCGGAAGAAAGATCCTCAGCCCAAACGGCAATCTTCTTCCTCTTCTGCGCTCTCAGCCGCCGCCGCCATGATGGGCGCGCAGAGGTTGTCGTCCATGTTTACTTCCGCAGTTTTCAAGAAAAGCAGGGACGATAAGGCCTGTGACAGCATCGTCGATGATGTTATCGCGGAGTTCGCGCCGGATGAGACCGATAGACTGAGTCGGAGAAGGCTTCAAGTGGATTCGTCGTCTGGCGCCAACGACGCTCAACGGATTAAGCCATCTGTTGGTGATTCTATCAGAGGTTCTTCGTTGTCCAAAGCTTTTGCAAATGGTGACGCTGAACCGGTTAGGGTTTTTCAGAACAATGGATGCGACTTGGGCTTAGAGCAAAAGTGCGAAGCGGAAGTGAATGAAAATGTAAGTTCGGAAAATGGCCAGGTACCAGTAGAGCAATCTAATGACTGCCCAAGTAATGAGGATTTAGATGAGGAGAAAGTGGCGAAGGACGTTGAAATAGAAGTGAAACAAGATGCGAAAAAGGAAGTGTTCACTTTGAATGCCAAAGTTACAAAAGAGGAGGAGGATCCAGCATTGTGTGCGACTGCTGGTTGGCAAGCAGCGAAGAGTGGTGCCGGCGGAGGAGTGGAGATCAACGCTGCTGATTCGAAGGATGCTTCACATAGCCAACAACACACGGAGTTTAATCTTGAGACAGATGGATCGCTGCCTTTCTACATACTAGATGCCCACGAGGAGTTTTATGGAGCCAATATGGGAACTCTATATTTGTTTGGGAAGGTCAAAACAGGGAATTTGTATCAGAGTTGCTGTGTTGTTGTGAAGAACATGGAGAGGTGTGTATATGCAATTCCAAGTCGGCCTTTGCATTACACTGATGAGATGGTGAATCTTGAGAAAGATGTCCAAGAGTCTCGAATTTCTCCTCAAGATTTCCGTAAAAAGCTGCATGATATGGTATCTGATATAAAGAATGAGATAGCAAAACATCTGGTGGATCTGAGCGTTTCTACCTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGAACGGTCTGAAATTCCTACCGGTGAAAATTATGTGGTGAAAATAAATTACCCATTCAAGGATCCAGTACTTCCAGTAGACCTCAAAGGAGAAAGTTTCTGTGCTCTCCTAGGAACTCGTTGCAGTGCACTCGAGCTTTTTCTGATTAAAAGAAAGATAAAGGGGCCTTCATGGCTACAGGTTTCAAACTTTTCTACCCGCTCAGCTTCTCAAAGGGTTAGCTGGTGCAAATTTGAAGTGACTGTCGACTCTCCTAAAGACATAAGGATTTCTTCAAATTCTTCAAAATTCACTTTCGAGATTCCTCCTGTGGTTGTCACGGCGATAAACTTGAAAACCACCATAAATGAAAAGCAGAACATAAATGAAATTGTATCAGCATCAGTTGTCTGTTGCAATATGGTTAAGATTGACACTCCTATGTTGGCTTCAGAGTGGAAGAGACCTGGAATGCTGACCCATTTTACTGTTATTCGTAAGCTTGATGGGAATATATTTCCACTGGGATTCAGTAAGGAGGCTACGGACAGAAACATAAAAGCTGGGTCAAATGTTCTGTGTGTTGAAAGCAGTGAAAGAGCTTTGTTAAATCGTTTGATGTTAGAATTACACAAGTTGGATAGTGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATCCCAGGCTTGCAAAGTACCAAGCAGCATGTGGTCTAAACTAGGCCGCCTCAACCGTTCTACAATGCCTAAACTTGATAGAAGAAGCAAAGTTTTTGGTTCTGGAGCTGATCCTGGTATCATGTCTTGCATTGCTGGTCGGCTTCTTTGTGATACATATTTGTGTTCTCGTGACCTATTAAAGGAGGTTAGTTATGCTTTAACTCACCTCGCAAAAACACAGCTGAACAAGTTTCGGAAGGAAGTTGCTCCACATGACGTTCCAAAAATGTTCCAAACAACAAAATCCCTAATGGAGCTTATTGAATATGGTGAAACGGATGCCTGGTTGTCTATGGAACTCATGTTTCATCTGAGTGTTCTCCCGCTCACACGTCAGCTGACTAATATCAGTGGTAATTTGTGGGGAAAAACTCTTCAGGGTGCTCGGGCACAGAGAGTGGAATATTTATTATTGCATGCTTTCCATGCAAAGAAATATATTGTGCCAGACAAGTTTACAAATCATGCAAAAGAAACAAAATTGACCAAACGCAGAGTACATGGTGTTGATGATAGCAACTTTGATGAAGCAGAAATTGATGATGCAAACTACAATAATGATGCTTCTGAACGTGATTATAAGAAAAACAAAAAGGCTTCTTCCTATGCTGGGGGACTGGTTTTAGAGCCAAAGAAGGGTCTATATGACAAATATATATTGCTTCTGGATTTCAATAGTCTTTATCCTTCTATCATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTTCCGGCGGATCTTTTCCTCGTCTACCATCTAGTAAAATAACTGGAGTCTTGCCAGAGTTGCTGAAAAATCTGGTGGAAAGGAGGAGAAAGGTAAAGTCATGGATGAAGACTGCATCTGGTCTTAAAGTTCAGCAGCTGGACATTCAGCAGCAAGCACTGAAGCTTACTGCAAACAGCATGTATGGATGCCTGGGATTTTCCAATTCAAGATTTTATGCGAAACCACTAGCCGAGCTCATAACCCAACAAGGAAGGGAGATATTGCAGAGTACTGTTGATCTTGTTCAAAATAACTTGAATTTAGAGGTGATCTATGGTGATACTGATTCAATAATGATTTACAGTGGACTAGATGATATTGCGAAAGCAAAGGCAATGGCTGGGAAAGTTATTCAAGAGGTCAATAAGAAATATAGATGCTTGGAAATTGATCTTGATGGTTTATATAAGAGGATGCTACTTCTCAAGAAAAAGAAATATGCAGCTGTAAAGGTGCAGTTTAAAGATGGCACCCCATATGAGGTTATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTGGCTAAAGAATTAGGAGATTTTTGCTTGACTCAAATTTTGTCAGGAGGGTCATGTGAAGATGTTGTTGAATCAATTCACAGCTCTCTCATGAAGGTAAATTGTGATGTGTTGCAGCATCTGTCAGACATTTGTTTATAA | 3558 | 0.4362 | MADDEGSASRKRRTRGPEATARSQALERLKARLGGGRRSDPDGPQIRLENPIYDTVPEDEYNALVAKRREQARSFIVDDDGLGYGDEGEEEDWSKAGFTLSSDESDGESTKPKRKKDPQPKRQSSSSSALSAAAAMMGAQRLSSMFTSAVFKKSRDDKACDSIVDDVIAEFAPDETDRLSRRRLQVDSSSGANDAQRIKPSVGDSIRGSSLSKAFANGDAEPVRVFQNNGCDLGLEQKCEAEVNENVSSENGQVPVEQSNDCPSNEDLDEEKVAKDVEIEVKQDAKKEVFTLNAKVTKEEEDPALCATAGWQAAKSGAGGGVEINAADSKDASHSQQHTEFNLETDGSLPFYILDAHEEFYGANMGTLYLFGKVKTGNLYQSCCVVVKNMERCVYAIPSRPLHYTDEMVNLEKDVQESRISPQDFRKKLHDMVSDIKNEIAKHLVDLSVSTFSMAPVKRKYAFERSEIPTGENYVVKINYPFKDPVLPVDLKGESFCALLGTRCSALELFLIKRKIKGPSWLQVSNFSTRSASQRVSWCKFEVTVDSPKDIRISSNSSKFTFEIPPVVVTAINLKTTINEKQNINEIVSASVVCCNMVKIDTPMLASEWKRPGMLTHFTVIRKLDGNIFPLGFSKEATDRNIKAGSNVLCVESSERALLNRLMLELHKLDSDVLVGHNISGFDLDVLLHRSQACKVPSSMWSKLGRLNRSTMPKLDRRSKVFGSGADPGIMSCIAGRLLCDTYLCSRDLLKEVSYALTHLAKTQLNKFRKEVAPHDVPKMFQTTKSLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFTNHAKETKLTKRRVHGVDDSNFDEAEIDDANYNNDASERDYKKNKKASSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSGGSFPRLPSSKITGVLPELLKNLVERRRKVKSWMKTASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHSSLMKVNCDVLQHLSDICL. | 1186 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca10g00743 | 1185 | CDD | DNA_polB_alpha_exo | 565 | 816 | - | - | |
Seca10g00743 | 1185 | Coils | Coil | 282 | 302 | - | - | |
Seca10g00743 | 1185 | Gene3D | Palm domain of DNA polymerase | 905 | 1106 | IPR023211 | - | |
Seca10g00743 | 1185 | Gene3D | - | 351 | 550 | - | - | |
Seca10g00743 | 1185 | MobiDBLite | consensus disorder prediction | 247 | 269 | - | - | |
Seca10g00743 | 1185 | ProSitePatterns | DNA polymerase family B signature. | 1054 | 1062 | IPR017964 | GO:0000166|GO:0003676 | |
Seca10g00743 | 1185 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 18 | 1177 | - | - | |
Seca10g00743 | 1185 | MobiDBLite | consensus disorder prediction | 75 | 134 | - | - | |
Seca10g00743 | 1185 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Seca10g00743 | 1185 | Gene3D | - | 391 | 517 | - | - | |
Seca10g00743 | 1185 | Pfam | DNA polymerase family B, exonuclease domain | 381 | 758 | IPR006133 | - | |
Seca10g00743 | 1185 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Seca10g00743 | 1185 | Pfam | DNA polymerase alpha subunit p180 N terminal | 26 | 93 | IPR024647 | - | |
Seca10g00743 | 1185 | Pfam | DNA polymerase family B | 824 | 1178 | IPR006134 | GO:0000166|GO:0003677 | |
Seca10g00743 | 1185 | MobiDBLite | consensus disorder prediction | 106 | 121 | - | - | |
Seca10g00743 | 1185 | NCBIfam | DNA polymerase (pol2) | 52 | 1177 | - | - | |
Seca10g00743 | 1185 | SUPERFAMILY | Ribonuclease H-like | 346 | 853 | IPR012337 | - | |
Seca10g00743 | 1185 | PRINTS | DNA-directed DNA-polymerase family B signature | 923 | 936 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Seca10g00743 | 1185 | PRINTS | DNA-directed DNA-polymerase family B signature | 999 | 1011 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Seca10g00743 | 1185 | PRINTS | DNA-directed DNA-polymerase family B signature | 1052 | 1060 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Seca10g00743 | 1185 | SUPERFAMILY | DNA/RNA polymerases | 849 | 1171 | IPR043502 | - | |
Seca10g00743 | 1185 | FunFam | DNA polymerase | 391 | 517 | - | - | |
Seca10g00743 | 1185 | MobiDBLite | consensus disorder prediction | 247 | 262 | - | - | |
Seca10g00743 | 1185 | Gene3D | - | 565 | 877 | IPR036397 | GO:0003676 | |
Seca10g00743 | 1185 | Gene3D | Helix hairpin bin | 964 | 1015 | - | - | |
Seca10g00743 | 1185 | MobiDBLite | consensus disorder prediction | 182 | 207 | - | - | |
Seca10g00743 | 1185 | Gene3D | - | 1107 | 1182 | IPR042087 | - | |
Seca10g00743 | 1185 | FunFam | DNA polymerase | 565 | 878 | - | - | |
Seca10g00743 | 1185 | FunFam | DNA polymerase | 964 | 1013 | - | - | |
Seca10g00743 | 1185 | SMART | polmehr3 | 565 | 1066 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Seca10g00743 | 1185 | Coils | Coil | 1080 | 1100 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca10g00743 | Seca-Chr10 | 6994664 | 7006222 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca10g00743 | 1 | 1172 | Core DNA Replication Machinery Family | AT5G67100 | 59.681 | 0.0 | 1367 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca10g00743 | K02320 | - | gmx:100798779 | 1739.55 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca10g00743 | 10 | 6994664 | 7006222 | Seca10g00743 | 10 | 6994664 | 7006222 | ECH |