Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00740 ATGGGGGATAATATGTACCACTTTGACAAAAACCTCTCTTCCTCACAAGACGAAATCTCCCTTTTTCTGCGTCAGATTCTCCTCCGTTCATCCTCTTCTTCCTCCATGCCTGGATCCTGCAACTCTGCACCACCACCGCTTCAAGATGGGAAGATCTCGGCCCTTGATTCCACCCCTTCAATGGCTCACGCTGCAAATGTGTCTTCCTCCTCTCTAGGAGTGAGTGAGAATGAGACTGATGACTACGACTGTGAAAGTGAGGAGGGTTTTGAAGCATTGGCCGAAGAAGTTCGGACAAAATCTGTGCCTACTAGGAGTTCATCAAAAAGAAGCAGAGCAGCAGAAGTCCATAATTTGTCTGAAAAGCGAAGAAGAAGCAGGATCAACGAGAAAATGAAGGCTTTGCAGAATCTAATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTCGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGATTGAGTTTGCATCCTATGTGCTTCCCTGAAGGGTTGCAGCCTCTGCAATTTTCTCGGATGTGTATGGAATTAAATGAAGGAAACAGGTCTACCCCTTTAAACATGACAGGCACAGCCACTCTGCCTCTGCACCAAGATAACCCCTTGCACTATGGATCCAATCTACCTAACAAGCAAACTCTGCCAAATCAGCAACCATCAGCACCCTATTCTTCATATATTAACAACTCAGAAACTTCATTTGGGCTGGAATCCAGAATCCCAGCGCATATAAAACCTCTTCAACCCAGAGGAACTTCTGAGGTAAGCTCATTGTGTGTGTTTGGTTTACTGTAA 855 0.4444 MGDNMYHFDKNLSSSQDEISLFLRQILLRSSSSSSMPGSCNSAPPPLQDGKISALDSTPSMAHAANVSSSSLGVSENETDDYDCESEEGFEALAEEVRTKSVPTRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCFPEGLQPLQFSRMCMELNEGNRSTPLNMTGTATLPLHQDNPLHYGSNLPNKQTLPNQQPSAPYSSYINNSETSFGLESRIPAHIKPLQPRGTSEVSSLCVFGLL. 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00740 284 SMART finulus 118 167 IPR011598 GO:0046983
Seca10g00740 284 MobiDBLite consensus disorder prediction 223 247 - -
Seca10g00740 284 Pfam Helix-loop-helix DNA-binding domain 116 162 IPR011598 GO:0046983
Seca10g00740 284 MobiDBLite consensus disorder prediction 98 124 - -
Seca10g00740 284 Gene3D - 107 171 IPR036638 GO:0046983
Seca10g00740 284 CDD bHLH_AtPIF_like 112 174 IPR047265 -
Seca10g00740 284 MobiDBLite consensus disorder prediction 110 124 - -
Seca10g00740 284 Coils Coil 151 171 - -
Seca10g00740 284 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 270 IPR031066 -
Seca10g00740 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 109 172 IPR036638 GO:0046983
Seca10g00740 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 161 IPR011598 GO:0046983
Seca10g00740 284 FunFam Basic helix-loop-helix transcription factor 107 170 - -
Seca10g00740 284 MobiDBLite consensus disorder prediction 217 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00740 Seca-Chr10 6976027 6979801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00740 77 193 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 72.500 3.85e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca10g00740 HLH 2.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00740 - - vum:124831111 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00740 10 6976027 6979801 Seca10g00740 10 6976027 6979801 ECH
Seca10g00740 10 6976027 6979801 Seca10g00740 10 6976027 6979801 PCT