Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00736 ATGGAAGATCTGGAGAACGAACTGAGCTTTATGGATGGATTGACAGAAGAGCAAATTATGAGCCATATTGGACAAGAAGTTGCCCAATCTGCTCCTGAGAATCAAGATACATCTGAAAATGAGATTTGTACAATATGTCAGGAGGAGTATGTGAATGGAGAACAACTTGGGAGACTGGATTGTGGGCACAAATATCACCTTGCTTGCATCAAACAATGGTTGGTGTTGAGGAACAACTGCCCTATTTGCAAACAAACGGCTCTGGCTGTTGAAAGTGATGATGAATGA 288 0.4167 MEDLENELSFMDGLTEEQIMSHIGQEVAQSAPENQDTSENEICTICQEEYVNGEQLGRLDCGHKYHLACIKQWLVLRNNCPICKQTALAVESDDE. 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00736 95 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 12 88 IPR045191 GO:0061630
Seca10g00736 95 Pfam Ring finger domain 42 84 IPR001841 -
Seca10g00736 95 ProSiteProfiles Zinc finger RING-type profile. 43 84 IPR001841 -
Seca10g00736 95 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 89 IPR013083 -
Seca10g00736 95 SMART ring_2 43 83 IPR001841 -
Seca10g00736 95 SUPERFAMILY RING/U-box 29 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00736 Seca-Chr10 6930271 6930804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00736 13 88 C3H Transcription Factor Family AT2G15530 50.000 2.86e-21 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00736 - K22753 cam:101502092 112.079