Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00730 ATGTGGGATCTGAATGACTCACCCGATCAGAGAAAGGACTATGAATCTGAAGGATGTTCTTCTCTCAAGACTTCCATCGATGGGGATGATGATAAAGGCAAAACGCTTCGATCTGTTTCCAATTCAAGCTCCTCTGCCGTCGTCATAGAGGACGGATCCGAAGAAGAAGAAGAAACTGCTGACAGAACCATGAAGAAAAGAAGCAGCAAGATTTTTGGCTTCTCTGTTCCCCATCGCGAGGATGAGTCCATGGATAGTGACCACCCACCCATCACCCACCAGTTTTTTCCGGTGGAGGACTCGGAGATTGCAGCACCCTCCGGTGGTGGTAGTGGTGGTGGAGCCTCTTCTTTTCCTCGAGCTCACTGGGTTGGTGTAAAATTTTGTCAATCAGAAACACTTGGTGGTGGTGGTGGAAAATCAGTGGAAGTTTCACAACCGATGAAGAAGAGTCGCCGAGGACCAAGGTCTCGAAGCTCGCAGTATAGAGGAGTTACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCGGCCATTAAGTTCCGGGGAGTAGAGGCAGACATAAACTTCAATATAGAAGATTATGAAGAAGACTTGAAGCAGATGAGTAATTTAACCAAGGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGTTTTCCGAGAGGAAGTTCCAAATATAGAGGAGTCACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTCTTAGGAAAAAAGTACGTTTATCTGGGTCTGTTTGACACGGAGATTGAAGCTGCAAGGGCGTATGATAAAGCGGCAATTAAATGCAATGGCAAAGAGGCTGTCACTAATTTTGACCCCAGCATTTATGAAAACGAGCTTAATTCTGCAGAATCATCAGGTAAAGCTGCAGATCACAATCTGGATTTGAGTTTGGGCAATTCGAGCTCTAAGCATAATGGCAATAGTCCAGCAATGGGGAATGCCTCAACTGACCAACATATGCTACCTGAATCTAATTGGCGGAATGGGGGAAACAAGTCTAAGGTTCGTTTGGTGAATATACTACCAAAACCATGTAGTAGAGGCAACATGGAAGCTTATGGGCATGGGGAGAGTGAAGCATTAAGAATGCTAAGCCAAACTCACCTTCAATCTCCAGCTACTAATGAAATGCATAGATATGGTCCATACAGGTCGCCTGGAGAGCCTCAAATGCTTCACAATTTTGCACATCTTCACCAACCAAATTTTCATCTTCCAAGCAGCAGCAGCAATGGAGGCCGTATTGGAAGTGATCTTTCATTATCAATGTCGGATCAACAAGAGTGGCAACCAGGGCCTCCACCACATTTGTTAGCAAGTGCTGCAGCATCATCAGGATTCCCACCACAGATAAGACCCTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCTTGA 1530 0.4582 MWDLNDSPDQRKDYESEGCSSLKTSIDGDDDKGKTLRSVSNSSSSAVVIEDGSEEEEETADRTMKKRSSKIFGFSVPHREDESMDSDHPPITHQFFPVEDSEIAAPSGGGSGGGASSFPRAHWVGVKFCQSETLGGGGGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSAESSGKAADHNLDLSLGNSSSKHNGNSPAMGNASTDQHMLPESNWRNGGNKSKVRLVNILPKPCSRGNMEAYGHGESEALRMLSQTHLQSPATNEMHRYGPYRSPGEPQMLHNFAHLHQPNFHLPSSSSNGGRIGSDLSLSMSDQQEWQPGPPPHLLASAAASSGFPPQIRPSQGWLQKNGFHTLMRPS. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00730 509 FunFam AP2-like ethylene-responsive transcription factor 252 312 - -
Seca10g00730 509 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Seca10g00730 509 Pfam AP2 domain 252 301 IPR001471 GO:0003700|GO:0006355
Seca10g00730 509 PRINTS Ethylene responsive element binding protein signature 254 265 IPR001471 GO:0003700|GO:0006355
Seca10g00730 509 PRINTS Ethylene responsive element binding protein signature 292 312 IPR001471 GO:0003700|GO:0006355
Seca10g00730 509 ProSiteProfiles AP2/ERF domain profile. 161 217 IPR001471 GO:0003700|GO:0006355
Seca10g00730 509 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 84 404 - -
Seca10g00730 509 MobiDBLite consensus disorder prediction 333 370 - -
Seca10g00730 509 SUPERFAMILY DNA-binding domain 252 312 IPR016177 GO:0003677
Seca10g00730 509 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
Seca10g00730 509 MobiDBLite consensus disorder prediction 442 509 - -
Seca10g00730 509 SMART rav1_2 161 223 IPR001471 GO:0003700|GO:0006355
Seca10g00730 509 SMART rav1_2 253 316 IPR001471 GO:0003700|GO:0006355
Seca10g00730 509 MobiDBLite consensus disorder prediction 486 500 - -
Seca10g00730 509 MobiDBLite consensus disorder prediction 1 36 - -
Seca10g00730 509 CDD AP2 252 312 IPR001471 GO:0003700|GO:0006355
Seca10g00730 509 MobiDBLite consensus disorder prediction 320 370 - -
Seca10g00730 509 ProSiteProfiles AP2/ERF domain profile. 253 310 IPR001471 GO:0003700|GO:0006355
Seca10g00730 509 Gene3D AP2/ERF domain 252 311 IPR036955 GO:0003700|GO:0006355
Seca10g00730 509 Gene3D AP2/ERF domain 160 219 IPR036955 GO:0003700|GO:0006355
Seca10g00730 509 MobiDBLite consensus disorder prediction 134 162 - -
Seca10g00730 509 MobiDBLite consensus disorder prediction 442 468 - -
Seca10g00730 509 MobiDBLite consensus disorder prediction 1 67 - -
Seca10g00730 509 CDD AP2 161 218 IPR001471 GO:0003700|GO:0006355
Seca10g00730 509 FunFam AP2-like ethylene-responsive transcription factor 160 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00730 Seca-Chr10 6829256 6832105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00730 1 343 AP2-EREBP Transcription Factor Family AT4G36920 68.627 8.79e-136 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca10g00730 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00730 K09284 - gmx:100786333 795.038