Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00727 ATGGAGGGTGAAGGAAGAGGAGGGGGAGAGAGAGAGATGGGAACAAGGAAAAGAGGTGTGGTGGAAGGTGAGAGAAGGTACAAAGGAATAAGGATGAGAAAGTGGGGAAAGTGGGTTGCTGAAATTAGGGAACCTAATAAGCGTTCAAGGATTTGGTTAGGTTCTTATTCCACTCCTGTCGCCGCCGCTAGAGCCTACGACACCGCCGTTTTCTATCTCCGGGGACCTTCTGCGCGTCTTAACTTCCCGGAGCTTCTCACCGGAGAAGCCCCCGCCGTACTCGCCGGTTGCGACATGTCGGCGGCTACTATCAGGAAGAAAGCCACCGAGGTCGGTGCTAGAGTTGATGCTCTTCAAGCCACCCTTCACCACCACCACCCTCGTGTGGCGCCGTCGCCGGAGCTTCTCTCAGATGGAGGAGGCGGAGGGTCTGGGGATTTTGCGGAGCGGGTTGACCTGAACAAGATACCCGAACCTGAGAGTTCGGACTGTGAGTGGGATGTGAATTGA 510 0.5549 MEGEGRGGGEREMGTRKRGVVEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLTGEAPAVLAGCDMSAATIRKKATEVGARVDALQATLHHHHPRVAPSPELLSDGGGGGSGDFAERVDLNKIPEPESSDCEWDVN. 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00727 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 16 163 - -
Seca10g00727 169 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Seca10g00727 169 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Seca10g00727 169 MobiDBLite consensus disorder prediction 125 169 - -
Seca10g00727 169 FunFam Ethylene-responsive transcription factor 2 25 84 - -
Seca10g00727 169 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Seca10g00727 169 CDD AP2 26 85 IPR001471 GO:0003700|GO:0006355
Seca10g00727 169 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Seca10g00727 169 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Seca10g00727 169 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Seca10g00727 169 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00727 Seca-Chr10 6788260 6788769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00727 14 167 AP2-EREBP Transcription Factor Family AT5G67190 58.192 4.34e-59 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca10g00727 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00727 K09286 - gmx:100783682 250.366