Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00717 ATGGGGAGGACAGGACTGATGGTTTGTTGTCTTCTTTTGTTTCTTAAGTTCTTCCCAACTGCAGAGGAAGCTATTGATTACTTTAACCAGAAAAGATGTGTAGATGGAAAGGCTCTAGTTCTCCCTAGTCAGATTAGATATGTCAAATACTTTGAACGGACTTTAACGCACTTCAATGGAGAAGTCCAGCCTGGACGAAGGTGCATGCTAAGAGGGTTTCAGCTTCACAAATGCCCTTATTGGGTTAGACCATCCATTACAATATCTGATCATAGTGGAATTCTTTTCACAACAAGAAAGCATCCCAAAACAAAGGATCTAATGCCGGAAGATTTCTGGATCAGTGCACCGAAGAAAGGAATTGTGGTCTTTGCATTACCAGGGGAGCCTGGTCTGACAGAGTTGGTTGGGGACTTCAAAATTCATTTTCATGACCGACAGGGAGATTTCTACTGTTGGATGAATACAACAATGACAGAAAATCGAAAAATTTTAGATGGCTCAGATTTTGATGATTTTGACAAGAGAAAGATCCCTGCTCCAGGGTTCCAGGTCGAAATTGTGATGGTAGACTATAATGGCACCCTACCTGCAAGGACAAAAGCCAATCCTGTAAGCAAAGGATCTGACGGCAACACAAGCAATGACCTAGCAGGTGCAAGGCCTACATCTAATTCAAGTGATAGTAAGGGTCCTGGAAATGGAGATGATGATGTATTCTCGGATAGTGACGAAGAGGAGACCAAGGGAACACAAAGGAGGGAAACTGCAACTGAGTACGCACCTCATCAAGTATCTGAGGCCACTACAGCCCATGTAGGGATGTTGGCACATAAAACGGATCAGTTGTCACTCCAGCATGAGGAACACACACAAAACAATTCTTCTCAAGAATCAACTGCAAATAAAATTCATAAAATCCATGCAGGCCCTAACACCACTAACATGGAATCTGTGGGGGCTAATGATATCAAAGCAATTGCAGCAGATGCTTCAGTTTTTTCTTTTGGTGATGAAGATTTTGAGAGTGATTGA 1035 0.4242 MGRTGLMVCCLLLFLKFFPTAEEAIDYFNQKRCVDGKALVLPSQIRYVKYFERTLTHFNGEVQPGRRCMLRGFQLHKCPYWVRPSITISDHSGILFTTRKHPKTKDLMPEDFWISAPKKGIVVFALPGEPGLTELVGDFKIHFHDRQGDFYCWMNTTMTENRKILDGSDFDDFDKRKIPAPGFQVEIVMVDYNGTLPARTKANPVSKGSDGNTSNDLAGARPTSNSSDSKGPGNGDDDVFSDSDEEETKGTQRRETATEYAPHQVSEATTAHVGMLAHKTDQLSLQHEEHTQNNSSQESTANKIHKIHAGPNTTNMESVGANDIKAIAADASVFSFGDEDFESD. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00717 344 MobiDBLite consensus disorder prediction 199 232 - -
Seca10g00717 344 MobiDBLite consensus disorder prediction 287 316 - -
Seca10g00717 344 Gene3D Protein tyrosine phosphatase superfamily 1 65 IPR029021 -
Seca10g00717 344 SMART PTEN_C2_2 63 191 IPR014020 -
Seca10g00717 344 ProSiteProfiles C2 tensin-type domain profile. 65 192 IPR014020 -
Seca10g00717 344 MobiDBLite consensus disorder prediction 282 316 - -
Seca10g00717 344 MobiDBLite consensus disorder prediction 199 266 - -
Seca10g00717 344 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 303 - -
Seca10g00717 344 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 2 55 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00717 Seca-Chr10 6713642 6717013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00717 1 344 Protein tyrosine phosphatase (PTP) family AT3G19420 57.062 4.16e-140 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00717 K01110 - gmx:100801622 585.874