Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00710 ATGACAGCTGTATCCCAAATCCCAATCCAACCGCTTCCCTGGAAGAAGCGAAAAGACATGGATCGGATCAAAGGCCCATGGAGTCCCGAAGAGGACGAGGCTCTTCAGAAGCTCGTCGAGAAGCACGGGCCCAGGAATTGGTCCCTGATCAGCAAGTCCATACCTGGCAGGTCCGGCAAGTCCTGCAGGCTCCGGTGGTGCAATCAGCTCTCTCCCCAAGTGGAGCACAGAGCCTTCACTCCCGAAGAGGATGACACCATAATCAGGGCCCATGCCCGTTTCGGCAACAAATGGGCTACAATAGCCCGCCTCCTCTCAGGCAGAACCGACAACGCAATCAAGAATCACTGGAACTCCACTTTGAAGCGCAAGTGCGCTTCCATGATGATCGATGATGCTCAGCCGCTGAAGAGGTCCGTGAGTGCCGGTGCTGCTATGCCTGTTTCCACAGGGCTCTACATGAACCCACCCACACCTGGTAGCCCCTCTGGATCCGATATGAGCGAGTCCAGCGTACCAGTTAACTCCTCTTCCCATGTCTACCGGCCCGTGCCAAGGACCGGCGGGGTTCTACCGCCCGTAGAAACGACGTCGTCCTCCAATGACCCTCCAACTTCATTATCCCTGTCCCTGCCAGGTGTCGACTCTTCTTCTGAAGTCTCAAATCGGGTACCTGAGCCAACTCATGCCGCACCACCACCGCCGCCGCCGCCAACTGCAATCCCCTTGCTTCCGATAATGGCGGCGCCGGTTCAGATGGCGGTTGCGCAGCAGTTTCATGAGCAAAAGGAGTTGGCGCCGTTCAATTTCAGTGCAGAGTTGCTGGGTGTGATGCAGGAAATGATAAGGAAGGAGGTGAGGAGTTATATGGCGGGGCTGGAACAACAGAATGGGATGTGTTTTCAGGCAGCTGATGATGGGTTTAGGAACGCTTCGGTGAAGCGTATTGGGATTAGCAGGATCGATTCGTAA 972 0.5566 MTAVSQIPIQPLPWKKRKDMDRIKGPWSPEEDEALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASMMIDDAQPLKRSVSAGAAMPVSTGLYMNPPTPGSPSGSDMSESSVPVNSSSHVYRPVPRTGGVLPPVETTSSSNDPPTSLSLSLPGVDSSSEVSNRVPEPTHAAPPPPPPPTAIPLLPIMAAPVQMAVAQQFHEQKELAPFNFSAELLGVMQEMIRKEVRSYMAGLEQQNGMCFQAADDGFRNASVKRIGISRIDS. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00710 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 74 IPR017930 -
Seca10g00710 323 MobiDBLite consensus disorder prediction 192 224 - -
Seca10g00710 323 MobiDBLite consensus disorder prediction 151 239 - -
Seca10g00710 323 Pfam Myb-like DNA-binding domain 78 120 IPR001005 -
Seca10g00710 323 Pfam Myb-like DNA-binding domain 24 70 IPR001005 -
Seca10g00710 323 ProSiteProfiles Myb-like domain profile. 19 70 IPR001005 -
Seca10g00710 323 CDD SANT 26 68 IPR001005 -
Seca10g00710 323 Gene3D - 77 139 - -
Seca10g00710 323 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Seca10g00710 323 Gene3D - 23 75 - -
Seca10g00710 323 FunFam Transcription factor MYB44 78 124 - -
Seca10g00710 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 125 IPR017930 -
Seca10g00710 323 CDD SANT 78 121 IPR001005 -
Seca10g00710 323 MobiDBLite consensus disorder prediction 154 182 - -
Seca10g00710 323 SUPERFAMILY Homeodomain-like 21 117 IPR009057 -
Seca10g00710 323 SMART sant 75 123 IPR001005 -
Seca10g00710 323 SMART sant 23 72 IPR001005 -
Seca10g00710 323 PANTHER MYB PROTEIN-RELATED 24 198 - -
Seca10g00710 323 FunFam MYB transcription factor 24 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00710 Seca-Chr10 6627208 6628445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00710 17 322 MYB Transcription Factor Family AT4G37260 51.343 3.73e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g00710 Myb_DNA-bind_6 1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00710 K09422 - gmx:778197 434.876