Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00701 ATGCCTCCTCAAGAAAACCAACAACCGCTGCTAGAGGATTCTTTCCAAGAGCAAGAAGAAACCGCTTATGATTCGTCGGACAAGGTTGTCGTGGTCGGAATCGACGAATACGACTCTGACGAGTCTCAGGTACCACCGTTCTCATGGAAGAAGCTGTGGCTGTTCAGTGGCCCTGGTTTTCTGATGAGCATCGCTTTCTTGGATCCTGGGAACCTGGAGGGAGATCTTCAGTCAGGTGCCATTGCTGGCTACTCGCTGTTATGGCTACTCATGTGGGCTACGGCTATGGGACTCCTTATTCAGCTTCTGTCAGCACGCCTTGGAGTGGCCACTGGTAGACACTTGGCTGAACTCTGTAGGGAGGAGTACCCTACATGGGCCAGGATTGTGCTGTGGTTGATGACTGAGGTCGCTCTGATTGGCTCTGACATACAAGAGGTTATTGGGAGCGCTATTGCTATCAGGATTCTAAGTAATGGTGTTGTACCCCTCTGGGCTGGGGTCGTCATTACAGCTCTAGATTGTTTTATTTTTCTCTTCCTGGAGAACTATGGTGTGAGGAAATTGGAAGCATTTTTTGCTGTTCTGATTGGTATAATGGCTCTCTCATTTGCGTGGATGTTTGGTGAAGCAAAGCCCGATGGTGTTGATGTTCTTCTTGGTGTTTTGATTCCTAAACTTAGCTCCAGAACTATACAGCAAGCTGTTGGAGTTGTGGGTTGCATTATTATGCCTCACAATGTATTCTTGCATTCTGCTCTTGTTCAATCAAGACAGATTGACCACAAGAAAAAAGGCCGTGTTCAAGAAGCTCTTAATTACTACTCTATAGAATCTACCATCGCCCTTGTAGTCTCCTTTGCCATTAATATATTTGTCACAACTGTGTTTGCAAAGGGCTTTTATGGTACTGAAATAGCAAATAGCATTGGTCTTGTAAATGCAGGGAAGTACCTTCAGGAGAAGTATGGGGGTGGATTATTCCCTATCCTATATATATGGGGTATTGGACTATTAGCTGCTGGGCAAAGTAGCACTATTACTGGTACATATGCTGGACAATTTATTATGGGGGGTTTTCTGAATTTAAGGTTGAAAAAATGGATGAGGGCATTAATTACGCGGAGTTTTGCAATAATCCCTACCATGATAGTTGCTCTTATATTTGATACCTCAGAGGAATCATTAGATGTTCTGAATGAATGGCTTAATGTTCTTCAGTCAGTGCAAATCCCCTTTGCACTCATTCCCTTGCTTTGTTTGGTGTCGAAGGAGCAGATAATGGGCAGTTTCAGAATTGGCCCTGTCCTCCAGATTATTTCCTGGCTTGTGGCTGCTCTGGTGATAGTGATAAATGGCTATCTCCTGCTGGAATTCTTCTCCTCTGAAGTGAATGGAGCAGTGTCCACCACTATAGTGTCCGTAATAACAGCTGCATATGTTGCATTTGTACTTTACTTAATTTCACGGGCCATCACCTTTTCACCGTGGCAAAGTTTAACTCGATCAAAGACAGTTGCAAGCACAGGGAATTGA 1536 0.4434 MPPQENQQPLLEDSFQEQEETAYDSSDKVVVVGIDEYDSDESQVPPFSWKKLWLFSGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGRHLAELCREEYPTWARIVLWLMTEVALIGSDIQEVIGSAIAIRILSNGVVPLWAGVVITALDCFIFLFLENYGVRKLEAFFAVLIGIMALSFAWMFGEAKPDGVDVLLGVLIPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQIDHKKKGRVQEALNYYSIESTIALVVSFAINIFVTTVFAKGFYGTEIANSIGLVNAGKYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSFAIIPTMIVALIFDTSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGSFRIGPVLQIISWLVAALVIVINGYLLLEFFSSEVNGAVSTTIVSVITAAYVAFVLYLISRAITFSPWQSLTRSKTVASTGN. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00701 511 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 50 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca10g00701 511 PRINTS Natural resistance-associated macrophage protein signature 131 157 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca10g00701 511 PRINTS Natural resistance-associated macrophage protein signature 161 180 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca10g00701 511 PRINTS Natural resistance-associated macrophage protein signature 186 207 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca10g00701 511 PRINTS Natural resistance-associated macrophage protein signature 342 361 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca10g00701 511 PRINTS Natural resistance-associated macrophage protein signature 370 387 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca10g00701 511 PRINTS Natural resistance-associated macrophage protein signature 404 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca10g00701 511 PRINTS Natural resistance-associated macrophage protein signature 235 258 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca10g00701 511 Pfam Natural resistance-associated macrophage protein 73 434 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca10g00701 511 NCBIfam Nramp family divalent metal transporter 57 426 - -
Seca10g00701 511 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 43 491 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca10g00701 511 Hamap Divalent metal cation transporter MntH [mntH]. 38 460 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca10g00701 511 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00701 Seca-Chr10 6499272 6502591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00701 1 497 Inorganic Solute Cotransporters AT2G23150 78.884 0.0 799
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00701 K21398 - gmx:100807811 924.465