Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00689 ATGTTGGAGCTGTGCCGCAGGCCACTGCAGATGTGCTTTTGTGGTGGAAGCAACAATGATGAGCTCTTGTGGCACGTGGATTTGAAACCCCATGCCTCAGGAGACTATTCAATTGCAGTGGTACAAGCTAATGCCTCAGGAGACTATTCAATTGCAGTGGTACAAGCTAATTCCTCCTTGGAAGACCAAGGACAAGTCTTCACCTCTCCAGCCGCAACTTTTGTTGGCGTATACGACGGCCATGGTGGACCCGAAGCTTCCCATTTCATCACCAACCATCTCTTCTCCTTCCTTTGCAAGTTCGCTTCAGAGGAAGGTGGTTTGTCAGAGCAAGTGATAAAGAAGGCCTTCAATGCAACTGAAGAGGAGTTCTTAAATTTAGTGAGGCAATCTTGGACTGCACAGCCACATATTGCTTCAGTGGGTTCTTGTTGTCTCTTGGGAGCGATTTCAAATGATGTTCTTTATGTTGCTAATCTCGGGGATTCGAGAGCGGTTCTGGGTCGGAAAGCATTGGAAGGACAGGTAAATTGTGCTCCTGTGGTGGCAGAGCGTTTGTCCACGGATCATAATGTTGGAGTGGAGGAGGTCAGAAAGGAGGTTGAGGCTCTTCACCCTGATGATGAACACATTGTGGTTCACAATCATGGAGTTTGGCGAATCAAGGGCATTATTCAGGTCTCAAGATCAATTGGAGATGTTTATCTAAAGAAACCAGATTTTGACAATAATCCTTTGTTCCGGCAATTTGTATGTCCGGTACCTTTAAAGAGACCCGTAATGACAGCAGAACCATCGATATTGACGCCGAAGTTGAGAGCAGAAGATATGTTTTTGATCTTTGCATCAGACGGACTTTGGGAACATTTAACCGATGAAGCGGCTGTTGAAATCATATTCAGAAGTCCAAGAATAGGAATAGCAAAACGATTGATAAGAGCTGCATTGGAAGAGGCTGCTAAAAAAAGAGAAATGAGATATGAGGATATAAAAGGAATTGAGAAAGGTATAAGGCGCTATTTTCATGACGATATTACGGTGATCGTTCTATACCTCGATCATTCACAAGGTTCTCTGAATGGTAGGTCAAGACATCAAGGAGACTGTGATTGCATTGCTACTCCTGTTGATATCTTTTCTCTCAAAGCAGATAAATCTAACCTGTAA 1167 0.4387 MLELCRRPLQMCFCGGSNNDELLWHVDLKPHASGDYSIAVVQANASGDYSIAVVQANSSLEDQGQVFTSPAATFVGVYDGHGGPEASHFITNHLFSFLCKFASEEGGLSEQVIKKAFNATEEEFLNLVRQSWTAQPHIASVGSCCLLGAISNDVLYVANLGDSRAVLGRKALEGQVNCAPVVAERLSTDHNVGVEEVRKEVEALHPDDEHIVVHNHGVWRIKGIIQVSRSIGDVYLKKPDFDNNPLFRQFVCPVPLKRPVMTAEPSILTPKLRAEDMFLIFASDGLWEHLTDEAAVEIIFRSPRIGIAKRLIRAALEEAAKKREMRYEDIKGIEKGIRRYFHDDITVIVLYLDHSQGSLNGRSRHQGDCDCIATPVDIFSLKADKSNL. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00689 388 ProSitePatterns PPM-type phosphatase domain signature. 74 82 IPR000222 GO:0043169
Seca10g00689 388 ProSiteProfiles PPM-type phosphatase domain profile. 48 352 IPR001932 -
Seca10g00689 388 Gene3D - 32 359 IPR036457 -
Seca10g00689 388 CDD PP2Cc 55 352 IPR001932 -
Seca10g00689 388 SMART PP2C_4 38 350 IPR001932 -
Seca10g00689 388 FunFam Probable protein phosphatase 2C 42 44 360 - -
Seca10g00689 388 PANTHER PROTEIN PHOSPHATASE 49 350 IPR015655 GO:0004722|GO:0006470
Seca10g00689 388 Pfam Protein phosphatase 2C 71 321 IPR001932 -
Seca10g00689 388 SUPERFAMILY PP2C-like 55 353 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00689 Seca-Chr10 6388551 6392770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00689 18 358 PP2C-type Phosphatase Gene Family AT3G51370 51.576 1.34e-130 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00689 - K01102 gmx:100802394 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00689 10 6388551 6392770 Seca10g00689 10 6388551 6392770 ECH
Seca10g00689 10 6388551 6392770 Seca8g07716 8 174431272 174434461 PCT