Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00673 ATGACGCAATTCACACACTTTTCCAACCCTAACATGAACAAAAATCAAATTCCTAGGACTAGGCCCTGGGCTGGCCATGGATTCCCTATCCCTACACCTAATAAGTCATCCCTAGATAGCTTCGGCGACGCCAATTGCATGGAACAGTTACTTGTTCACTGTGCCAACGCCATCGAAAGCAACGATGTAACTCTGGCCCAACAAAACCTTTGGGTCCTCAATAACATAACACCCCCAGACGGTGACTCCAATCAGCGCCTAGCAGGTAGCTTCCTTCGAGCCCTCACCGCTCGTGCTGCCAAAACAGGCAGTTACAAAATGCTTGAAGCCGTTACAGACGCTCAAACTGACAATAACAACCTCTCCATACACACTCACAAATTCTCTGTCATCGAGTTAGCCAACTTCGTTGACTTGACCCCTTGGCATCGTTTCGGTTTCACAGCTGCTAATTCCGCCATTCTAGAAGCTTCTGAAGGATTCTCCGTTATTCACATTGTGGACTTGAGCTTAACACATTGCATGCAGATTCCCACTCTCATTGACGCACTCGCCACGCGCTATGAGGTTCCTCCATTAATCAAGCTTACCGTTGCTGCTGGTACTTCTAGTTCTAATATTCCACCTATGCTTGACCTTTCCTACGACGAATTGGGCGCCAAATTGGTCAACTTCGCTAGGTCAAAGAACGTTCTTATGGAATTCAGAGCGGTTTCTTCCACTTACGCAGATGGATTCGCTGCTTTGATTGAACACCTTCGGGTGCTGCAACATATGGTTTATGTAGCAGAAGGTCATCATCCAAATGAAGCTTTGGTCATAAACTGTCACATGATGCTTCATTACATTCCGGATGAATCTCTCTCTACAACAATTCATGATGCAGATTCCAATTCTTATGTTTATGACTCTTCTTCTTCTTCTTCTCCTTCTTCTTCTGTTAATGCTTCGTCGTTGCGATCGATGTTCCTCAAGGCACTACGGAGTTTAGACCCGACGATTGTCGTTTTGGTGGATGAAGATGCAGATTTAACATCTGATAATTTGGTTTGTAGATTAAGGTCTGCGTTTAATTATTTATCGATACCATACGACACGGTGGACACGTTTCTTCCACGAGGAAGTAAACAAAGGCAGTGGTATGAAGCGGATATTTGCTGGAAGATAGAGAATGTGATAGCACATGAAGGGATTCAGAGGGTTGAGAGGGTTGAGCCTAAAAGCAAGTGGGAGCAACGCATGAGGAATGCAAACTTTCATGGGATTAGTTTCAGTGAGGATTCGGTTACGGAGGTGAAGGCAATGCTTGATGAACATGCAGCTGGATGGGGATTGAAGAAGGAAGATGAGCAACTTGTGCTCACATGGAAAGGCCACAATGTTATCTTTGCCTCTGTTTGGTTGCCTGCTGCTTGA 1416 0.452 MTQFTHFSNPNMNKNQIPRTRPWAGHGFPIPTPNKSSLDSFGDANCMEQLLVHCANAIESNDVTLAQQNLWVLNNITPPDGDSNQRLAGSFLRALTARAAKTGSYKMLEAVTDAQTDNNNLSIHTHKFSVIELANFVDLTPWHRFGFTAANSAILEASEGFSVIHIVDLSLTHCMQIPTLIDALATRYEVPPLIKLTVAAGTSSSNIPPMLDLSYDELGAKLVNFARSKNVLMEFRAVSSTYADGFAALIEHLRVLQHMVYVAEGHHPNEALVINCHMMLHYIPDESLSTTIHDADSNSYVYDSSSSSSPSSSVNASSLRSMFLKALRSLDPTIVVLVDEDADLTSDNLVCRLRSAFNYLSIPYDTVDTFLPRGSKQRQWYEADICWKIENVIAHEGIQRVERVEPKSKWEQRMRNANFHGISFSEDSVTEVKAMLDEHAAGWGLKKEDEQLVLTWKGHNVIFASVWLPAA. 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00673 471 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 46 457 IPR005202 -
Seca10g00673 471 Pfam GRAS domain family 47 467 IPR005202 -
Seca10g00673 471 MobiDBLite consensus disorder prediction 1 18 - -
Seca10g00673 471 MobiDBLite consensus disorder prediction 1 31 - -
Seca10g00673 471 ProSiteProfiles GRAS family profile. 38 468 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00673 Seca-Chr10 6251842 6253257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00673 19 469 GRAS Transcription Factor Family AT3G49950 55.556 1.73e-173 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca10g00673 GRAS 1.2e-90 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00673 - - adu:107487668 700.279