Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00668 ATGGCTTCCGAACGTGGAATAAGCCCCGAGACATTGGGGAAAGCTGTGGACTCTCTCCTCAAATGGCGCAAATCTCAATCAGAGACCCAAAAGCCAAAACTCTTCGACCAAGACGAAGAGTTCGTTTACCTCGTCCTCACTCTGAAGAAAATCGCCCAAAAGGGTCGCGTTAACCCTCACAAGATCCCTCTCCCTCACTCTCTCCTCTCCCCTATCTCCGAACAGCTGCTCATCCTCGACGACAGGCCCAACAAAGCCCGCATCACAAAGCCCCAGGCCCAGAAGAAGATCCAGTCTGAGTCCATCCCCATCTCGAAGGTCCTCAAGCTCTCTAAGCTCGCCTCCGATTACCGTCCCTTCGAAGCGAAGCGGAAGCTCTGCGATTCGTACGACCTCCTCTTCGCCGAAAAGAGCATCGTTCCCCTCCTGCCGCGGTTGCTGGGTAAGCAGTTTTTCAAGAAGCGGAAGATTCCGGTACCGTTGGATTTGAAGAAGAATAACTGGAAGGAGCAGGTGGAGAGGGCGTGTTCGGCAGCGATGTTGTTCTTGAGGACGGGGACTTGTAGTGTTGTTAGGGTTGCTAAGCTGAGCATGGAAAGGGATGAGATTCTGGAAAATCTGGTTGCTGCTATTGATGGTGTTGTTGAGGTTGTTCCCAAGAAGTGGGGGAATGTGAGGTCGTTTCATGTGAAGTTGTTGGATTCAATTGCCTTGCCGATTTATCAGGTCCTTCCTGATTTGAAGTTGAAAATTGAGGGTGCAAAGGCCGATAGGGAGGTGCAGGAGAAGAAGAAGGAGAAGGATGAGGCTGGAGAGATTAAGAAGAAGAAGGGGAGGATTCATGAAATTTGGTACATGGATGATAAAGTGGGTGAGGATGAGTCTGGGAGTGATGATGATGGTGGTGGTGATAACAATGATGAGGTTGGCAAAAGGGGAGTGGTGGAAGAACGTAATAAGAAGAGGAAGAACAGAAACAATAACCGTAGAGCAGAATGGCTCGGAGAAACTGAGCGTGAGAGGGTAAGAATTGTCAGGGAATGGGTGCAAATGATTAGCCAGCAGAGAGGGTCATGTGGGAGCCGGAGGGATGCTCCAGCAAGTGAATCTGCTCAAGTTGATCGAGCCCATAATGCAGTAACTGATCACGATGAGGGTCAGCCAGAGCATGTTCGGCGTGACTTGTTGAGGTTGCGTGAAAGGCAGGCTCTAGTTGATTTGCTTTCACTGCTCAGAGGTAGATTCATCCGAAATGAAAGAACTGTTGAAGATGAGAGGCCTCCGTCTATGGCTGCAAATGAATTAGTTCAGTTGAGACAACGACACACAGTCCCTGGTTTGAGGTATGCAATTCAAGACTTACTTCCAAAGGGGTTTCGTTCAAGATTAGAAACTATTGTTCGTGGTCAAGCAGGCACCAATCCTGATGCCACTTCAAATAGTAACATTAATGAAACAAGAAGCAACGAGAACCAAGCAAACAATCAGATAGATGGCCAGCAAGAAAATTATGAACAACAGCAGATTAAGAGCCTGGAAACTGATGTGCGTCAGTTGCCTAATCAAACAGGAACTGTAGAGAGTAGAACAAGTGAGATTATTAATTGGCAAGATGCTAGTAATCAAGGAGAGAATTGGCAGGAACAAATTACTGAAGATGGGGGAGGAAACTGGCAACAGAGAACTTATGGCCCATTCAATCAGCTAAGAGATGGAAGGGAAGTCAGTGATTGGCCACAGGAAACTCCCAGAAATTTAGCTGGGGAAGATCCTCATCCACGGGAAGTTCGAAGAGTTTGGCATGAGGATAGCACGAGGGAAGCTGTTGGTAATTGGTCTGAAGGATCATCTGGAGCTTCAAGAAATTGCCGTGGTGTTCCTTTTAGAAGATTCAATAGATTTCATCCGCCTGACGATGATAATGTATACAGCATGGAGCTTAGAGAACTTCTGAGCAGGAAAAGTGTTTCTAACCTACTTCGCAGTGGTTTCCGTGAAAGTCTGGACCAACTAATACAGTCTTATGTGGAAAGGCAAGGTCGTGCACCAATTGACTGGGATTTACATCGGAACTTGCCAACACCAACTCCTGCCTCACCTGAACGCGACCCTGATCAGCTGGGTGATGAACGTAATGAGGGTCAGCATGAAGCAATTAACAGACCTTCACTGGTCTTGCCTTCTCCGCCATTACCTCCGCCACAACCACTGTGGCACCAAGATTTGCATCAAACTGGATGGTCTCGCTTCCATGCAAAATCATCAGCAGTTGCTGCTAAGGAGTGGGAGATAATGAATGGCTTAAGATCAGATATGGCAAGACTTCACAAAGGCATGAATCACATGCAGAGAATGCTGGAGGCCTGTATGGATATGCAACTAGAGTTGCAGCGTTCTGTCAGGCAGGAGGTCTCTGCAGCTCTGCACCGCTCAGCTGGTGAAAATGGATTGGGTGCTGAGACTTCTGATGACGGGTCTAAATGGGGCATATGTGGACACATGTGCACATGTTCAAAATGTGCCAATGAGTTAGTTCGTGGCGGGGGTAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2607 0.4779 MASERGISPETLGKAVDSLLKWRKSQSETQKPKLFDQDEEFVYLVLTLKKIAQKGRVNPHKIPLPHSLLSPISEQLLILDDRPNKARITKPQAQKKIQSESIPISKVLKLSKLASDYRPFEAKRKLCDSYDLLFAEKSIVPLLPRLLGKQFFKKRKIPVPLDLKKNNWKEQVERACSAAMLFLRTGTCSVVRVAKLSMERDEILENLVAAIDGVVEVVPKKWGNVRSFHVKLLDSIALPIYQVLPDLKLKIEGAKADREVQEKKKEKDEAGEIKKKKGRIHEIWYMDDKVGEDESGSDDDGGGDNNDEVGKRGVVEERNKKRKNRNNNRRAEWLGETERERVRIVREWVQMISQQRGSCGSRRDAPASESAQVDRAHNAVTDHDEGQPEHVRRDLLRLRERQALVDLLSLLRGRFIRNERTVEDERPPSMAANELVQLRQRHTVPGLRYAIQDLLPKGFRSRLETIVRGQAGTNPDATSNSNINETRSNENQANNQIDGQQENYEQQQIKSLETDVRQLPNQTGTVESRTSEIINWQDASNQGENWQEQITEDGGGNWQQRTYGPFNQLRDGREVSDWPQETPRNLAGEDPHPREVRRVWHEDSTREAVGNWSEGSSGASRNCRGVPFRRFNRFHPPDDDNVYSMELRELLSRKSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPASPERDPDQLGDERNEGQHEAINRPSLVLPSPPLPPPQPLWHQDLHQTGWSRFHAKSSAVAAKEWEIMNGLRSDMARLHKGMNHMQRMLEACMDMQLELQRSVRQEVSAALHRSAGENGLGAETSDDGSKWGICGHMCTCSKCANELVRGGGKCPLCRAPIVEVVRAYSIL. 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00668 868 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 831 868 - -
Seca10g00668 868 Gene3D - 86 178 IPR016095 -
Seca10g00668 868 MobiDBLite consensus disorder prediction 549 566 - -
Seca10g00668 868 MobiDBLite consensus disorder prediction 686 715 - -
Seca10g00668 868 SUPERFAMILY Ribosomal protein L1 37 241 IPR023674 -
Seca10g00668 868 MobiDBLite consensus disorder prediction 355 388 - -
Seca10g00668 868 Pfam Ribosomal protein L1p/L10e family 20 235 IPR028364 -
Seca10g00668 868 MobiDBLite consensus disorder prediction 468 494 - -
Seca10g00668 868 Pfam Zinc finger, C3HC4 type (RING finger) 831 860 - -
Seca10g00668 868 MobiDBLite consensus disorder prediction 549 591 - -
Seca10g00668 868 FunFam Ribosomal protein L1p/L10e family 86 177 - -
Seca10g00668 868 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 820 866 IPR013083 -
Seca10g00668 868 MobiDBLite consensus disorder prediction 304 327 - -
Seca10g00668 868 SUPERFAMILY RING/U-box 825 861 - -
Seca10g00668 868 CDD Ribosomal_L1 14 240 IPR028364 -
Seca10g00668 868 MobiDBLite consensus disorder prediction 288 327 - -
Seca10g00668 868 Coils Coil 483 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00668 Seca-Chr10 6213990 6220988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00668 129 231 Cytoplasmic Ribosomal Protein Gene Family AT2G27530 29.126 6.53e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00668 - - gmx:100784174 842.032