Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00667 ATGAGTTGCAACGGTTGCCGAGTCCTTCGAAAGGGTTGCAGCGAGTCCTGTATCTTGCGCCCTTGTCTTCAGTGGATCGACACCCCTGAAGCTCAAGGCCATGCCACTGTCTTTGTAGCCAAATTCTTCGGCCGTGCAGACCTCATGTCCTTCATTTCCAACGTCCCTGAACCCCAAAGACCTGCTCTGTTTCAATCTCTGTTGTTCGAAGCGTGTGGACGAACGGTGAACCCTGTGAACGGTGCCGTGGGGCTTTTATGGACTGGAAACTGGCACGTGTGCCAGGCGGCGGTTGAGACGGTGCTCCGTGGCGGCACCCTGAGACCTATGCCGGAGCTCCTTGGTTTAGACGCTCCCACTCCCACCGCCGACGACGCGTCTGAAGGGGAAGTCACATGTAACGACATGTGGAGGGTCCGAGATCCGAATCCGAATTTACGGTTCACACACTCGCGGTCTAATAAGGTCGCTTCCGGCGGTAAACGCAAGCGATCGGATGAACTAGCCAAGCTTCAGACCACGGCTGATCTCAATCTCCGGCTGACACCGAGTTTCCTGCAGAACGTGTCGTCCTATGGCTGCCGACGAGAAATTCGCCGGCCGGGATCGCCGTCGATGAATTCAGAGGAATCCGTGACTACGGCGACGTGCTTGGAGACCAGGATCGGAGATCACTACGCTCACGACGCAGACCGGAAAGTGCTCAACCTTTTCATTTGA 720 0.5625 MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMPELLGLDAPTPTADDASEGEVTCNDMWRVRDPNPNLRFTHSRSNKVASGGKRKRSDELAKLQTTADLNLRLTPSFLQNVSSYGCRREIRRPGSPSMNSEESVTTATCLETRIGDHYAHDADRKVLNLFI. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00667 239 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Seca10g00667 239 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Seca10g00667 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00667 Seca-Chr10 6187230 6188914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00667 1 238 AS2 family AT3G49940 55.469 5.98e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca10g00667 LOB 6.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00667 - - gmx:100816189 443.351