Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00663 ATGCATCGGGACGTAAAGCCTCATAATGTAATGATTGACCATGAGCAACGTAAGCTTCGCCTTATAGATTGGGGCCTTGCAGAGTTTTATCATCCTGGGAAAGAATATAATGTCCGCGTTGCCTCGAGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTATGGTCTCTTGGTTGTATGTTTGCTGGAATGATATTTCGTAAGGAACCATTCTTTTATGGACATGATAACCATGATCAACTAGTAAAAATAGCTAAGGTGCTTGGAACAGATGAATTAAATGCATATCTGAACAAGTATCACATACAATTGGATCCACATCTTGCAGTGCTTGTTGGGAGGCATGGCCGGAGGCCATGGACGAAGTTCATTAACGTAGATAATCAACACTTGGCTGTTCCTGAGGCTGTTGACTTCGTTGACAAGTTACTGCAGTACGATCACCAAGAACGGCCCACTGCAAAAGAAGCTATGGCCCACCCATACTTCAATCCAGTCAGAAATGCGGAAAGCAGAACTCCTACACATTGA 558 0.4229 MHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHIQLDPHLAVLVGRHGRRPWTKFINVDNQHLAVPEAVDFVDKLLQYDHQERPTAKEAMAHPYFNPVRNAESRTPTH. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00663 185 Pfam Protein kinase domain 1 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00663 185 SMART serkin_6 1 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00663 185 SUPERFAMILY Protein kinase-like (PK-like) 1 176 IPR011009 -
Seca10g00663 185 CDD STKc_CK2_alpha 1 172 IPR045216 GO:0004674|GO:0006468
Seca10g00663 185 FunFam Casein kinase II subunit alpha 1 175 - -
Seca10g00663 185 Gene3D Transferase(Phosphotransferase) domain 1 1 172 - -
Seca10g00663 185 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 182 IPR045216 GO:0004674|GO:0006468
Seca10g00663 185 ProSiteProfiles Protein kinase domain profile. 1 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00663 Seca-Chr10 6131075 6135583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00663 1 173 MAP Kinase Gene Family AT3G59790 35.556 6.63e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Seca10g00663 Pkinase 2.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00663 K03097 - zju:107409035 365.925