Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00659 ATGGGTGCTCATGAACCGGCGAAGCTGCGGTGGGGAGAACTCGAAGAGGACGACGGTGAGGATCTCGACTTCCTCTTGCCACCTCGCCAGGTCATAGGTCCAGACGAAAACGGCATTAAGAAGGTTATTGAGTACAAATTCGACGATGACGGCAACAAGGTCAAGATCACCACAACCACTCGCACCCGCAAGCTTGCCAACGCCCGACTCAGCAAACGCGCCGTCGAACGCCGCTCCTGGCCCAAGTTCGGCGACGCCGTCCACGAAGACGTTGGCAGCCGCCTCACCATGGTCTCCACCGAAGAGATCCTCCTCGAACGCCCCAAGCCTCTTGGTTCCAAATCAGAGGAGACAAAGGCTGCTGGAGACCCGTTGTCTCAATTCCAAAAAGGTGCTGTTCTTATGGTCTGCAGGACTTGCGGGAAGAAAGGTGACCATTGGACTTCAAGGTGTCCATACAAGGATCTTGCCCCTCCATCTGAGGGATTCGTCGATAAGCCTGCTGGCGCGGATGTTGCGGCTGCTGCTGCTGGATCGACCAAGGGAGCATATGTACCTCCTGGCATGAGAGCAGGTGCAGAGAGGACTAGTGGATCAGACATGCGGCGTAGGAACGATGAAAATTCTGTGCGGGTAACCAACCTCTCAGAGGACACGAGGGAGCCTGATTTGCTTGAGCTGTTCCGTCCATTTGGTCCTGTTAGTAGAGTCTATGTTGCTATTGATCAGAAAACTGGTATGAGCAGGGGATTTGGTTTTGTTAACTTTGTCAGTCGAGAAGATGCTCAAAGAGCTATCAACAAACTGAATGGATATGGCTACGACAGTCTCATCCTGAGAGTTGAATGGGCCACCCCAAGGACAAACTGA 870 0.5333 MGAHEPAKLRWGELEEDDGEDLDFLLPPRQVIGPDENGIKKVIEYKFDDDGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVHEDVGSRLTMVSTEEILLERPKPLGSKSEETKAAGDPLSQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAPPSEGFVDKPAGADVAAAAAGSTKGAYVPPGMRAGAERTSGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGPVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINKLNGYGYDSLILRVEWATPRTN. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00659 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Seca10g00659 289 PIRSF Transl_init_eIF-3_RNA-bind 2 289 IPR017334 GO:0003743|GO:0005737|GO:0005852
Seca10g00659 289 CDD RRM_eIF3G_like 209 284 IPR034240 -
Seca10g00659 289 CDD eIF3G 37 155 IPR024675 -
Seca10g00659 289 Pfam Eukaryotic translation initiation factor 3 subunit G 30 156 IPR024675 -
Seca10g00659 289 SMART rrm1_1 209 282 IPR000504 GO:0003723
Seca10g00659 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 18 285 - -
Seca10g00659 289 MobiDBLite consensus disorder prediction 185 207 - -
Seca10g00659 289 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 8 288 IPR017334 GO:0003743|GO:0005737|GO:0005852
Seca10g00659 289 Gene3D - 177 289 IPR012677 -
Seca10g00659 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 275 IPR000504 GO:0003723
Seca10g00659 289 FunFam Eukaryotic translation initiation factor 3 subunit G 172 289 - -
Seca10g00659 289 SUPERFAMILY RNA-binding domain, RBD 195 288 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00659 Seca-Chr10 6049620 6051017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00659 7 287 Eukaryotic Initiation Factors Gene Family AT3G11400 69.551 1.52e-153 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00659 K03248 - gmx:100818725 533.872