Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00655 ATGGACGGTAACTGTTGTAAATCTCTCCGGAATGCCAAGCAATTCATTCCGTTACCTCCTCCGTTGCCCCATTCAGCAGCAACCGGTTGTCCTTGCAAGTGTCTGGTGACCAATAATTCAGCATCAAGCGGGCACAGTCGCAGTGTCTCTTCATCAACAAGAGATTTGTGGGACCATCTTTTTGATGAAGGTTATAAAGCAGACGTTTGCATCAATACTGATAACGGTGGAATTGTTTATGCTCATTCTAACATTCTTGCCATGGCTTCTCCTGCATTGAGGGGGATGTTGAAGCAAGCAAAGCGTCACAAGAGATGGCGATCAATCTCAATCTTAGGGGTTCCACATGATGCAGTCCGAGTTTTTATTCGATTCCTGTACTCTTCCTGTTATGAGAAGGAAGAAATGGAGGAATTCATCCTACAATTGTTGGTGCTGTCACATGTGTACGTGGTCCCTCATTTGAAGCGTGAATGTGAAGAGAAGCTAGAATTGGGCTACCTCACCATAGATAACGTGGTCGATGTATTTCAACTTGCGTTACTATGTGATGCTCCAAGGCTCAGCCTCATTTGTCACCGTAAGATACTAAAAAACTTTAAAGTTGTTTCGGAATCAGAGGGATGGAAGGCAATGAAGCAGAGCCACCCAGTTCTAGAAAAGGAAGTTCTGGAGTCAGTGATTGATGAAGAAAATAGTAAGAAGGAGAGGATGAGAAAAATCAATGAAAGAGAGATCTATCTGCAATTATACGATGCAATGGAAGCTCTTGTTCACATATGCAGAGATGGTTGTAAAACTATTGGTCCTCATGATAAAGACTTCAAAGCAAATCAACCGTGCAAGTATGCAGCCTGCAAGGGACTAGAATTACTTGTACGTCATTTTGCTGGGTGTAAATTGAGAGTTCCAGGGGGTTGTGTTCATTGCAAGAGAATGTGGCAACTATTGGAGCTGCATTCTCGACTATGTGCTGATCCTGATTACTGTAGAGTTCCTTTGTGCAGGAACTTTAAGCAGCGAATATCGAAACAAAGCAAGAAAGATGAAATTAGATGGAAAATATTGGTTGAGAAGATATTGAGAACAAGAGGAATTGGGATAGCACCGTGCTTTCGGCCGCAATGA 1128 0.4264 MDGNCCKSLRNAKQFIPLPPPLPHSAATGCPCKCLVTNNSASSGHSRSVSSSTRDLWDHLFDEGYKADVCINTDNGGIVYAHSNILAMASPALRGMLKQAKRHKRWRSISILGVPHDAVRVFIRFLYSSCYEKEEMEEFILQLLVLSHVYVVPHLKRECEEKLELGYLTIDNVVDVFQLALLCDAPRLSLICHRKILKNFKVVSESEGWKAMKQSHPVLEKEVLESVIDEENSKKERMRKINEREIYLQLYDAMEALVHICRDGCKTIGPHDKDFKANQPCKYAACKGLELLVRHFAGCKLRVPGGCVHCKRMWQLLELHSRLCADPDYCRVPLCRNFKQRISKQSKKDEIRWKILVEKILRTRGIGIAPCFRPQ. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00655 375 SUPERFAMILY TAZ domain 244 344 IPR035898 -
Seca10g00655 375 Gene3D - 168 241 - -
Seca10g00655 375 Pfam TAZ zinc finger 252 335 IPR000197 -
Seca10g00655 375 SMART BTB_4 67 167 IPR000210 GO:0005515
Seca10g00655 375 SMART TAZ_2 244 336 IPR000197 -
Seca10g00655 375 FunFam BTB/POZ and TAZ domain-containing protein 3 46 166 - -
Seca10g00655 375 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 38 367 IPR044513 -
Seca10g00655 375 Gene3D Potassium Channel Kv1.1; Chain A 36 166 IPR011333 -
Seca10g00655 375 CDD BACK 169 229 - -
Seca10g00655 375 ProSiteProfiles BTB domain profile. 67 135 IPR000210 GO:0005515
Seca10g00655 375 Pfam BTB/POZ domain 59 163 IPR000210 GO:0005515
Seca10g00655 375 Gene3D TAZ domain 242 363 IPR035898 -
Seca10g00655 375 FunFam BTB/POZ and TAZ domain-containing protein 2 169 239 - -
Seca10g00655 375 SUPERFAMILY POZ domain 47 163 IPR011333 -
Seca10g00655 375 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Seca10g00655 375 FunFam BTB/POZ and TAZ domain-containing protein 2 241 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00655 Seca-Chr10 6007602 6012828 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Seca10g00655 BTB 1.9e-12 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00655 - - lja:Lj2g3v1968190.1 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00655 10 6007602 6012828 Seca10g00655 10 6007602 6012828 ECH