Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00652 ATGGAGAGTTATCTAAATAAGAATTTTGGAGAAGTGAAGTCCAAAAACTCCTCTGAAGAAGCTCTTCAAAGATGGAGGAATCTGTGCGGCTTCGTAAAGAACCCAAAAAGACGCTTTCGTTTCACTGCCAATCTCTCCAAGAGGGAGGAAGCAGCTGCTATGCGTCGTTCCAATCAGGCGAAACTGAGGGTCGCAGTTTTGGTTTCTAAAGCAGCATTTCAATTTATCCAAGGCGCCCAGCTAAGTGATTACAAAGTGCCAGAGGAAGTTAAAGATGCAGGATTTCAAATCTGTGGTGATGAATTAGGGTCTATTGTTGAAGGTCATGATGTAAAGAAGTTCAGATATCACGGTGGGGTTAATGGTGTTGCAGAAAAGCTTTCTACATCAATCACTAAAGGGCTTAGCAATGATCCTGATTCACTGAATAGGAGACAAAGGATATATGGAATCAATAAATTTACTGAAAGTGCAGCTCGGAGTTTCTGGGTTTTTGTTTGGGAAGCTCTCCAAGACATGACTCTCATGATACTTGGAGTGTGTGCTTTTGTGTCTCTGATAGTTGGCATTGCAACGGAAGGATGGCCCAAGGGGGCTCATGATGGTCTTGGAATTGTTGCTAGTATCTTACTGGTTGTCTTTGTGACAGCAACAAGTGATTATCGCCAATCATTACAATTCAAGGATTTAGACAAGGAGAAGAAGAAGATATCCATTCAGGTCACAAGGAATGGATATAGGCAGAAAATGTCAATATATGAATTACTTCCTGGTGATATTGTGCATCTTGCCATTGGTGACCAAGTCCCTGCTGATGGACTATTTGTTTCAGGATTTTCTGTGCTGATTGATGAATCAAGTTTAACAGGAGAGAGTGAGCCAGTGGTGGTAAATTCTGAAAATCCTTTTCTTCTTTCTGGAACCAAAGTCCAAGATGGATCATGCAAGATGTTGATTACCACTGTTGGGATGAGGACTCAATGGGGTAAGTTGATGGCTACTCTCAGTGAAGGTGGAGATGATGAAACACCATTACAGGTGAAATTGAACGGAGTGGCAACCATTATTGGGAAGATTGGCCTATTTTTTGCCGTGGTTACTTTTTCAGTTCTGGTGCAAGGACTCGTGAGCCATAAACTCCAACAAGAAAGCTTCTGGAGCTGGACTGGGGATGATGCATTGGAGATGTTGGAGTTCTTTGCAGTTGCAGTTACCATTGTTGTTGTTGCTGTTCCAGAAGGGCTGCCATTAGCTGTGACATTGAGTCTTGCATTTGCTATGAAAAAGATGATGAATGACAAGGCACTTGTCCGACATTTGGCGGCTTGTGAGACCATGGGTTCAGCCACTACTATATGTAGTGACAAGACTGGGACACTAACAACCAATCACATGACTGTTGTGAAAACATGCATTTGCATGAACAGCAAAGAGGTGAGCAATAAGACTTCTAGTTTGTGCTCTGAACTCCCAGAATCTGCTGTGAAACTGTTGCTAGAGTCAATATTTAACAATACAGGAGGAGAGGTTGTGGTTGACAAAGATGGAAAACGTGAGATTCTAGGGACACCAACTGAGACTGCAATATTGGAATTTGGCTTGTCATTAGGTGGCGATTTTCAAGAAGAAAGACAAGCATGTAAACTTGTTAAAGTTGAGCCATTCAACTCTACTAAGAAAAGGATGAGTGTAGTGGTACAGCTCCCTGGTGGAGGTTTACGAGCACATTGTAAAGGTGCTTCTGAAATAATTCTGGCTGCTTGTGACAAAGTGCTCAACTCAAACGGTGAGGTTGTCCCCCTTGATGAAGAATCAACTAACCATCTTAAGGCTACAATAAACCAGTTTGCTAGTGAGGCACTTAGAACTTTATGCATTGCTTATATGGAATTGGAAAATGGGTTCTCTGCTGAAGACCCCATTCCTGCTTCTGGATATACTTGTATAGGAGTTGTTGGTATCAAAGACCCTGTCCGTCCTGGTGTTAAGGAGTCTGTAGCAGTATGCCGTTCAGCTGGAATAACAGTAAGAATGGTTACAGGTGACAATATTAATACTGCAAAGGCTATAGCCAGGGAATGTGGGATTTTAACAGATGATGGCATAGCCATTGAAGGTCCAGATTTTAGAGAAAAGAGTCAGGAAGAGTTGCTTGAACTGATCCCCAAAATTCAGGTTATGGCTCGATCCTCACCTTTAGACAAACATACATTGGTGAAACACCTCCGTACCACGTTTGGGGAAGTTGTAGCTGTAACTGGTGATGGAACAAACGATGCCCCTGCCCTTCATGAAGCCGACATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTTGCAAAAGAAAGTGCAGATGTCATAATTTTGGATGATAACTTCTCCACAATAGTAACAGTGGCCAAATGGGGACGTTCAGTTTACATAAATATTCAGAAATTCGTACAGTTCCAGCTGACAGTTAATGTGGTTGCATTAATAGTGAACTTCACATCAGCTTGCTTGACAGCAGCTTGCATGACAGGATATAAAAAACCTTTCCTTTTCCTTCTATTTTTTTTTTTTCCTTATGATATTATGTGCATTTTCTCTCCAGGAACTGCTCCTCTCACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACATTGGGAGCACTTGCGCTTGCAACAGAGCCTCCAAATGATGATTTAATGAAGCGTTCACCTGTTGGAAGGAAAGGGAATTTCATCAGCAATGTCATGTGGAGGAATATCTTGGGACAATCACTGTATCAGTTTATGGTGATATGGTTTCTTCAGTCAAAAGGAAAATCGATCTTTTCACTTGATGGTCCCGATTCGGATCTGGTCTTAAACACACTTATTTTCAACTCATTTGTATTCTGCCAGGTTTTCAATGAGATAAACTCACGTGAGATGGAGAAAATTGATGTTTTTAAAGGCATATTGGATAATTATGTCTTCGTGGGTGTCATCAGTGCTACTGTTTTCTTTCAAATCATTATAGTTGAGTACTTGGGAACCTTCGCAAACACAACACCTCTCACTCTGGCTCAGTGGTTCTTTTCCTTATTAGTTGGATTTATAGGCATGCCTATTGCTGCTCAATTAAAGAAGATCCCTGTCCGAAGCACGTGA 3141 0.4167 MESYLNKNFGEVKSKNSSEEALQRWRNLCGFVKNPKRRFRFTANLSKREEAAAMRRSNQAKLRVAVLVSKAAFQFIQGAQLSDYKVPEEVKDAGFQICGDELGSIVEGHDVKKFRYHGGVNGVAEKLSTSITKGLSNDPDSLNRRQRIYGINKFTESAARSFWVFVWEALQDMTLMILGVCAFVSLIVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYELLPGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVVVNSENPFLLSGTKVQDGSCKMLITTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFSVLVQGLVSHKLQQESFWSWTGDDALEMLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKTCICMNSKEVSNKTSSLCSELPESAVKLLLESIFNNTGGEVVVDKDGKREILGTPTETAILEFGLSLGGDFQEERQACKLVKVEPFNSTKKRMSVVVQLPGGGLRAHCKGASEIILAACDKVLNSNGEVVPLDEESTNHLKATINQFASEALRTLCIAYMELENGFSAEDPIPASGYTCIGVVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKSQEELLELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFTSACLTAACMTGYKKPFLFLLFFFFPYDIMCIFSPGTAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRSPVGRKGNFISNVMWRNILGQSLYQFMVIWFLQSKGKSIFSLDGPDSDLVLNTLIFNSFVFCQVFNEINSREMEKIDVFKGILDNYVFVGVISATVFFQIIIVEYLGTFANTTPLTLAQWFFSLLVGFIGMPIAAQLKKIPVRST. 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00652 1046 Gene3D - 168 1034 - -
Seca10g00652 1046 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Seca10g00652 1046 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Seca10g00652 1046 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Seca10g00652 1046 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Seca10g00652 1046 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Seca10g00652 1046 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Seca10g00652 1046 FunFam Calcium-transporting ATPase 17 77 - -
Seca10g00652 1046 SFLD C1.7: P-type atpase like 435 805 - -
Seca10g00652 1046 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Seca10g00652 1046 SUPERFAMILY HAD-like 451 886 IPR036412 -
Seca10g00652 1046 Pfam Cation transport ATPase (P-type) 514 591 - -
Seca10g00652 1046 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 1044 IPR023298 -
Seca10g00652 1046 Gene3D - 139 336 - -
Seca10g00652 1046 FunFam Calcium-transporting ATPase 646 798 - -
Seca10g00652 1046 NCBIfam calcium-translocating P-type ATPase, PMCA-type 110 837 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Seca10g00652 1046 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 662 IPR023299 GO:0000166
Seca10g00652 1046 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Seca10g00652 1046 Gene3D - 17 77 - -
Seca10g00652 1046 CDD P-type_ATPase_Ca_PMCA-like 142 915 - -
Seca10g00652 1046 FunFam Calcium-transporting ATPase 216 336 - -
Seca10g00652 1046 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516
Seca10g00652 1046 Pfam Cation transporter/ATPase, N-terminus 116 185 IPR004014 -
Seca10g00652 1046 PANTHER CATION TRANSPORTING ATPASE 59 1043 - -
Seca10g00652 1046 Pfam E1-E2 ATPase 237 431 - -
Seca10g00652 1046 Gene3D - 463 657 IPR023299 GO:0000166
Seca10g00652 1046 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca10g00652 1046 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca10g00652 1046 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca10g00652 1046 SMART Cation_ATPase_N_a_2 114 190 IPR004014 -
Seca10g00652 1046 FunFam Calcium-transporting ATPase 463 657 - -
Seca10g00652 1046 Pfam Cation transporting ATPase, C-terminus 867 1040 IPR006068 -
Seca10g00652 1046 NCBIfam HAD-IC family P-type ATPase 723 836 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca10g00652 1046 NCBIfam HAD-IC family P-type ATPase 385 481 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca10g00652 1046 Gene3D - 450 798 IPR023214 -
Seca10g00652 1046 SFLD p-type atpase 435 805 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00652 Seca-Chr10 5978262 5985079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00652 1 1043 Primary Pumps ATPases AT4G37640 80.939 0.0 1732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00652 K01537 - gmx:100792691 1828.53