Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00647 ATGGGGAAGAAGCAGCACAGCAAAGACAGGATGTTCATCACTAAAACCGAATGGGCAACGGAATGGGGAGGCGCCAAATCCAAAGAGAATCGCACCCCTTTCAAACGTCTTCCTTTCTATTGCTGCGCGCTTACATTTACGCCGTTTGAGTATCCAGTTTGCACAGCTGATGGAAGTGTATTCGATGTTATGCACATTACTCCCTATGTTATAAAGTATGGTAAACACCCTGTCACTGGAACTCCGCTGAAGCAGCAAGATCTCATTCCACTAACTTTCCACAAGAATTCAGAAGGAGAATATCACTGTCCAGTACTAAACAAAGTTTTCACTGAATTTACACATATTGTGGCGGTGAAGACTACAGGAAATGTGTTCTGCTATGAGGCCGTTAAAGAGTTAAACATTAAGACAAAAAACTGGAAGGAGCTGCTCACCGACGAGCCATTTACTAAGGATGACCTTATAACAATTCAGAATCCTAATGCACTTGACTGCAAGGTTCTTTATGATTTTGATCATGTTAAACACAATTTGAAAGTTGATGATGAAGAACTACAGAAAATGAGTTCAGATCCAACCTATAACATAAATATGACGGGTGATATCAAGCAAATGCTTAAGGAGCTTGGAACTGAGAAAGGAAAGGAAACCGCAATGCATGGGGGAGGTGGTGGCAAGGCACAAAAAGAAAGGGCTGCTGCACTTGCCGCCATCTTAGCTGCAAGGTCACATGTTAAAGAGGATTCCAAATCAAATCCAAATGGCGAGGGCAATGCTCCTCAGGCTTTCAGTATTGTAGATGCTGCATCTGCCTCAGTACATGGAAGAAGTGCTGCTGCTGCTAAAGCCTCATCAGGTGATAAAACTGCTGCTAGAATAGCTATGCACAAGGCTGGTGAAAGGGCACCAGTGAATGCAAAGCTGGTAAAGAGCCGTTTCACTACTGGTGCTGCTTCCCGGTCTTTCACTTCAACATCATTTGATCCAGTTACAAAAAATGAATTTGAATATGTGAAAGTTGAGAAGAATCCAAAGAAGAAGGGATATGTACAACTGCATACCACACATGGTGATTTGAATATTGAGCTGCATTGTGATATAACGCCCAGGGCATGTGAGAACTTCATCACACTTTGTGAACGTGGATATTACAACGGAGTTGCTTTTCATAGAAACATAAGGAATTTTATGATACAAGGTGGTGATCCTACTGGCACTGGTAGAGGAGGTGAATCAATATGGGGAAAGCCTTTTAAAGATGAACTTAACTCCAAATTAATTCACTCTGGAAGGGGTGTGGTCAGCATGGCAAACAGTGGCCCCCACACTAATGGTTCCCAGTTTTTTATCTTGTACAAGTCTGCAAATCATTTAAACTTCAAACATACAGTTTTTGGCGTAGTTGTTGGTGGCTTGACTACACTAGCAGCAATGGAAAAGGTTCCTGTAGATGATAGTGACAAACCTCTGGTGAGTCGTTTATTCTTTTCACTGTTGATGAAATAG 1509 0.4201 MGKKQHSKDRMFITKTEWATEWGGAKSKENRTPFKRLPFYCCALTFTPFEYPVCTADGSVFDVMHITPYVIKYGKHPVTGTPLKQQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEPFTKDDLITIQNPNALDCKVLYDFDHVKHNLKVDDEELQKMSSDPTYNINMTGDIKQMLKELGTEKGKETAMHGGGGGKAQKERAAALAAILAARSHVKEDSKSNPNGEGNAPQAFSIVDAASASVHGRSAAAAKASSGDKTAARIAMHKAGERAPVNAKLVKSRFTTGAASRSFTSTSFDPVTKNEFEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRACENFITLCERGYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLIHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGVVVGGLTTLAAMEKVPVDDSDKPLVSRLFFSLLMK. 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00647 502 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Seca10g00647 502 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Seca10g00647 502 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Seca10g00647 502 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Seca10g00647 502 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Seca10g00647 502 CDD cyclophilin_RING 350 493 - -
Seca10g00647 502 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 344 491 IPR044666 -
Seca10g00647 502 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 490 IPR002130 GO:0000413|GO:0003755
Seca10g00647 502 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Seca10g00647 502 SUPERFAMILY Cyclophilin-like 343 494 IPR029000 -
Seca10g00647 502 FunFam Peptidyl-prolyl cis-trans isomerase cyp65 331 496 - -
Seca10g00647 502 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 491 IPR002130 GO:0000413|GO:0003755
Seca10g00647 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Seca10g00647 502 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Seca10g00647 502 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Seca10g00647 502 SUPERFAMILY RING/U-box 37 105 - -
Seca10g00647 502 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Seca10g00647 502 FunFam Peptidyl-prolyl cis-trans isomerase 2 41 96 - -
Seca10g00647 502 Gene3D - 331 495 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00647 Seca-Chr10 5936514 5945119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00647 1 491 U-box Gene Family AT5G67530 80.448 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00647 K10598 - gmx:100819923 907.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00647 10 5936514 5945119 Seca10g00647 10 5936514 5945119 ECH