Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00636 ATGGCTTCGAGATTCTGGACTCAGGGTGCTAGTGAATCTGAGGAGGAAGAGAGTGATTATGATGAGGAGGTTGAGACTGGAGTGGGTGAATCTGCTAGTGAAGCCGTTACAAGCAGGTACCTGCGGGACAATGCAAGTGACAGTGATGATTCTGATGGCCAAAAGCGTGTTGTCAGGTCTGCAAAAGATAAGCGTTTTGAGGAGATGGCTTCCACCGTGGACCAAATGAAGAATGCCATGAAGATCAATGACTGGGTGAGCTTGCAAGAGAGCTTTGACAAGATTAACAAACAGCTTGAGAAAGTCATGCGTGTCACTGAATCTGAGAAGGTTCCCAATCTTTATATCAAGGCACTTGTGATGTTGGAAGATTTCTTGGCCCAGGCTTTGGCAAATAAGGATGCCAAAAAGAAGATGAGTAGTAGCAATGCTAAAGCCTTGAACTCAATGAAGCAGAAATTGAAGAAGAACAATAAGCAATATGAGGATTTGATTAACAAATGCAGGGAGAATCCGGAGAGTGAGGAGGAAAAAGAGGAAGAAGAGTCGGAGGAAGAATATGAAAGTGATGATGAGATTATCGAGCCTGATCAGCTTAGGAAGCCAGAATTGAAATCAGATTCCGAAGCCTCTCATTATGAAGATGAAAAGGCAGATGCCGGTGAAGGACCTTGGGACCAAAAGCTTAGCAAGAAAGATAGACTTTTTGATAGACAGTTCATGAAAGACCCTAGTGAGATTACGTGGGACACTGTTAACAAGAAGTTCAAAGAGGTTGTGGCGGCTAGGGGCAGGAAGGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTTACCTTCTTAACAAAAGTTGCTAAAACACCTGCACAGAAGCTGGAAATCCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAACCCGGGCCTCAGTGGGCATATGCCCATAAATGTGTGGAAAAAATGCGTGCAGAATATGCTGGTCATTCTTGATATTCTAGTGCAGTACCCAAACATAATGGTTGATGATTCGGTGGAGCTAGATGAGAATGAAACTCAGAAAGGGCCTGACTATAATGGACCAATTCGGGTTTGGGGTAACTTAGTTGCTTTCTTAGAAAAAATAGATGCTGAGTTTTTCAAGAGCCTGCAGTGCATAGATCCTCATACACGTGAGTATGTTGAGAGACTCAGGGATGAACCCGTGTTTTTGATTCTTGCTCAGAATGTCCAGGAGTATCTTGAAAGGGTTGGAAATTTCAAAGCTTCTTCTAAGGTGGCCTTGAAGAGGGTTGAACTCATTTACTACAAGCCACAAGAGGTTTATGATGCCATGAGAAAATTGGCTGAGCAGACAGAAGATGGAGATAATGGAGGGGAGGTGAGTGAGGAGTCTAAAGGGTTTGAGGAAACAAGAATTCCTACTGCATTTGTGGTTACTCCAGAGCTTGTGGCCAGGAAACCCACATTCCCTGAGAATAGCCGGACCCTAATGGATTTATTAGTATCACTGATATACAAATATGGAGATGAGCGCACTAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCTTGATGAGTTCTCAATCGCCCGGGATCTGCTGCTTATGAGTCATTTGCAAGATAATGTTCAGCATATGGACATTTCCACACAGATACTTTTTAACAGGGCCATGTCGCAATTAGGACTGTGTGCTTTTCGGGTTGGACTGATTTCTGAAGCACATGGCTGTCTGTCTGAACTTTATTCTGGTGGAAGGGTGAAAGAGTTGCTCGCACAAGGTGTGTCACAAAGTCGTTATCATGAGAAGACTCCAGAACAGGTACTGATCCCCCTCCCCCCACAAGAAAGGTTGGAAAGAAGACGTCAGATGCCTTATCATATGCACATAAATCTTGAGCTCTTGGAGGCAGTGCATCTTATATCTGCCATGCTGCTGGAAGTTCCCAATATTGCAGCCAATGTTCATGATGCAAAACGCAAGGTCATTAGTAAGACTTTCCGTCGCCTGCTTGAGATCAGCGAGAAACAAACATTCACGGGTCCACCTGAAAATGTCAGAGATCACATTATGGCTGCCACAAGGGTTCTTAGTAAAGGAGACTTCCAAAAGGCTTTTGACATAATCGTGTCTCTTGATGTATGGAAATTTGTGAGAAATCGGGATGCAGTGCTCGAAATGCTGAAGGACAAAATCAAGGAGGAGGCACTGAGGACATACCTCTTTACCTTCTGTTCATCTTATGATTCCCTGAGTCTGGACCAGCTCACAAAAATTTTTGACCTCTCTGTTCCTCGCACTCACAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAACCAACTGGGTGCATTATTTTCCAAGATGTTGAGCACTCTAGGCTGCAGGGATTGGCATTCCAATTGACTGAGAAAGTATCTATCCTTGCAGAGAGTAATGAAAGAGCTACAGAGGCAAGGATAGGTGGTGGTGGTGGATTGGATTTGCCTCTAAGGAGGAGAGATGGCCAAGATTATGCTGCTGCTGCTGCAGGTGGTAGTGGAACAGCCTCAGGTGGTAGGTGGCAAGACTTGTCCCTTTCCCAGCCAAGGCAAGGCCGTGGACGTGCAGGATATGGTAGTGGTGGTGGAAGGCCATTGGCATTAGGTCAAGCAGCTAGGAGTGGCTATTCAAGGGATCGAATGGGACGAGGAACAGGTGCTGGCTATCAGAGTGCATATGGGAGGACAACTCAAGGTGGTGCAGCATTGAGGGGAACCCCGGGTGACGTATCTACTCGCATGGTTAGCCTTAAGGGAGTTCGTGCGTAG 2835 0.4536 MASRFWTQGASESEEEESDYDEEVETGVGESASEAVTSRYLRDNASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKCRENPESEEEKEEEESEEEYESDDEIIEPDQLRKPELKSDSEASHYEDEKADAGEGPWDQKLSKKDRLFDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPINVWKKCVQNMLVILDILVQYPNIMVDDSVELDENETQKGPDYNGPIRVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPVFLILAQNVQEYLERVGNFKASSKVALKRVELIYYKPQEVYDAMRKLAEQTEDGDNGGEVSEESKGFEETRIPTAFVVTPELVARKPTFPENSRTLMDLLVSLIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDNVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQVLIPLPPQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNIAANVHDAKRKVISKTFRRLLEISEKQTFTGPPENVRDHIMAATRVLSKGDFQKAFDIIVSLDVWKFVRNRDAVLEMLKDKIKEEALRTYLFTFCSSYDSLSLDQLTKIFDLSVPRTHSIVSRMMINEELHASWDQPTGCIIFQDVEHSRLQGLAFQLTEKVSILAESNERATEARIGGGGGLDLPLRRRDGQDYAAAAAGGSGTASGGRWQDLSLSQPRQGRGRAGYGSGGGRPLALGQAARSGYSRDRMGRGTGAGYQSAYGRTTQGGAALRGTPGDVSTRMVSLKGVRA. 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00636 944 MobiDBLite consensus disorder prediction 848 932 - -
Seca10g00636 944 ProSiteProfiles PCI domain profile. 628 800 IPR000717 -
Seca10g00636 944 Coils Coil 144 171 - -
Seca10g00636 944 MobiDBLite consensus disorder prediction 43 63 - -
Seca10g00636 944 SUPERFAMILY "Winged helix" DNA-binding domain 724 799 IPR036390 -
Seca10g00636 944 Pfam PCI domain 668 796 IPR000717 -
Seca10g00636 944 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 878 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Seca10g00636 944 MobiDBLite consensus disorder prediction 194 228 - -
Seca10g00636 944 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 729 817 IPR000717 -
Seca10g00636 944 MobiDBLite consensus disorder prediction 134 228 - -
Seca10g00636 944 MobiDBLite consensus disorder prediction 1 63 - -
Seca10g00636 944 MobiDBLite consensus disorder prediction 175 193 - -
Seca10g00636 944 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 660 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Seca10g00636 944 MobiDBLite consensus disorder prediction 135 154 - -
Seca10g00636 944 MobiDBLite consensus disorder prediction 155 174 - -
Seca10g00636 944 MobiDBLite consensus disorder prediction 12 28 - -
Seca10g00636 944 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 938 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00636 Seca-Chr10 5855173 5860143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00636 1 944 Eukaryotic Initiation Factors Gene Family AT3G56150 67.827 0.0 1182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00636 K03252 - gmx:100779751 1558.5