Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00631 ATGCTCATGTTTCAGCCTTCTAAAAGGGATATGGTTGTTGGTGTTGGGTTCGAGGGTGGTGGCGACGGCCAGATTCTAGATCTGGACACCGCCGTGAAAGACGGTGTTTTGGGTGGGGTTGGGGGTGGGATTGTGGGAAGTGGGGTGTGTGAGAAGTTGGATCTGGGGAAGATGATTGAAGAGCTGGACTTGTATGAAGTGCCGAGTGTGTTCATATGCCCAATCTCGCTGGAACCAATGCAAGACCCTGTGACCCTTTGCTCGGGCCAAACCTACGAGAGGTCCAACATTCTCAAATGGTTCAACTTGGGGCACTTGACATGCCCCACAACGATGCAAGAGCTCTGGGATGATTCAATCACTCCAAACACCACTCTTTACAGGCTCATATACACATGGTTCTCTCAGAAGTACAGGTTGATGAAGAAGAGGTCGGAAGATGTGCAGGGGAGGGCTTCTGAGCTTGTGGAGACACTGAAGAAGGTGAAGGGTCAGGCTCGAGTTCAGGCCCTTAAAGAGCTCCATCAAGTTGTGGCTGCTCACGCCACTGCTCGAAAGACAGTGATTGATGAAGGTGGAGTTTCTGTTATGTCTTCCTTGCTTGGTCCTTTTACTTCCCATGCTGTTGGCTCTGAAGTCATTGGTATCCTTGTGACTTTGACCCTTGATTCAGAATCCAAAAAGAATCTTTTGCAGCCTACAAAAATTTCATTGATGGTGGACATCTTGAATGAGGGTTCAATTGAGACGAAAATCAATTGCACACGTCTGATTGAATCCTTAATTGATGAGAAAGATTTTCGTTCAGAGATTATCTCTAGCCATAGCCTTTTGGTTGGGTTGATGAGGCTTATTAAGGATAAGAGACACAGCAATGGAATCTGTCCTGGGCTAAGCCTCCTCAGAACAATATGTTTTCATAAAGAAGTTAGGAATTTGGTAGTAAGCATTGGGGCTGTTTCTCAATTGATTGAATTGTTATCTGGAATGGATCCTGATTGTTTGGAATTAGCACTTTGTGTTTTGGATGCATTGGCATCTATACCTGAAGGCAGAATGGCTTTAAAGAATTGTTCTAACACCATACCCATCCTGGTGAAATTGTTGATGAGGGTCTCAGAGAACTGCACCCAGTATGCATTGTCTATCCTATGGTCTGTGTGCAGGCTTGCACCTGAGGAGTGCTCATTGATTGCAGTTGATGCAGGGCTCGCTGCAAAACTCCTTCTTGTGATTCAAAGTGGTTGCAATCCGATATTGAAACAACAATCTGCTGAGCTTCTGAAGCTGTGTAGTTTAAATTATTCAGATACCATCTTCATTTCCAAGTGCAAGCTTACCAGAACCATCCAATGA 1356 0.4513 MLMFQPSKRDMVVGVGFEGGGDGQILDLDTAVKDGVLGGVGGGIVGSGVCEKLDLGKMIEELDLYEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFNLGHLTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYRLMKKRSEDVQGRASELVETLKKVKGQARVQALKELHQVVAAHATARKTVIDEGGVSVMSSLLGPFTSHAVGSEVIGILVTLTLDSESKKNLLQPTKISLMVDILNEGSIETKINCTRLIESLIDEKDFRSEIISSHSLLVGLMRLIKDKRHSNGICPGLSLLRTICFHKEVRNLVVSIGAVSQLIELLSGMDPDCLELALCVLDALASIPEGRMALKNCSNTIPILVKLLMRVSENCTQYALSILWSVCRLAPEECSLIAVDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ. 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00631 451 SUPERFAMILY ARM repeat 155 435 IPR016024 -
Seca10g00631 451 Gene3D - 138 445 IPR011989 -
Seca10g00631 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 137 IPR013083 -
Seca10g00631 451 SMART Ubox_2 70 133 IPR003613 GO:0004842|GO:0016567
Seca10g00631 451 CDD RING-Ubox_PUB 68 118 IPR045210 -
Seca10g00631 451 ProSiteProfiles U-box domain profile. 66 140 IPR003613 GO:0004842|GO:0016567
Seca10g00631 451 PANTHER WDSAM1 PROTEIN 61 437 IPR045185 GO:0061630
Seca10g00631 451 Pfam U-box domain 67 137 IPR003613 GO:0004842|GO:0016567
Seca10g00631 451 SMART arm_5 307 347 IPR000225 GO:0005515
Seca10g00631 451 SMART arm_5 348 389 IPR000225 GO:0005515
Seca10g00631 451 SMART arm_5 181 219 IPR000225 GO:0005515
Seca10g00631 451 SUPERFAMILY RING/U-box 61 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00631 Seca-Chr10 5803811 5805166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00631 1 451 U-box Gene Family AT3G49810 75.166 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00631 - - gmx:100779827 794.267