Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00621 ATGAAGCCTATCCAAAATGTTAACAATCAAAATAACTGGTTGGGTTTCTCCCTCACTCCCCCAATCAATATAGGTGTTCCTCCACAGTCACAGCCTTCCTCTGCTGCTGAAACATTTCTACCAAGCTTTTACCACCCTACACATGTTCATAACTATGGTTTTTACTATGGACTTGAAGGTGAAAATGTTGGATTGTATTCAGCCTTGCCTATCATGCCATTCAAATCTGATGGCTCCCTATATGGGATAGAATCTCTGAGTAGATCACAAGCACAAGCATTGGCAACTACTTCAACACCAAAACTGGAAACTTTCTTTCGTGGCCAGACTATGACAATCCCTCAATATGAATGCAATACCAAAGAAGCAATGCATCTGAGCTTAGAAAGTATGTTTTACAACCAAACCTTTTGCCATGACCCAAACAATCCAAATAACCTAAATCATGTACATGAGAATATTAGCCAGCAACAACTCTCATATAACTCTTCCCTAAGAAACCATGATGTGATGTTAGAAGGGTCCAAGCAAAATCAGCTTTCAGACAGTGTCCAGCTCCCAAATATGTTTGAGGATCTGAAGAATTGGGTCTCAAGGGACTTTCCAGGTAGCCATGCACAGCAGTCAAAGATGATTGTTCCAGTGGAGGATAATGGAGGCGAATCCGGGTCCATTGGATCAATGACATATGGGGAATTACAGTCATTGAGCTTGTCCATGAGTCCTAGCTCACAATCAAGCTGTGTTACAAGTTCACAACAGACAACACCACCTGCTCTCATTGATTCTGTTGTTGCCTTGGATACCAAGAAACGGGGTCCTGAAATGGTGGACTTGGAGCAAAATCAGAAGCAAATGGTTCTTAGGAAATCCATAGATACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGTTGGTTCTCCCCTGGTTTCTTACAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGTAAGAAAGAGGGTCAAGGCAGGAAAGGAAGGCAAGCAAAAGAGGAAAATAAATCCATATACAAGTGATTCCAAAATTTTTATTGTAGGGGGTTATGATGTGGAAGAAAAGGCTGCAAGAGCTTATGATATGGCCGCACTCAAGTATTGGGGACCCTCCACTCATATAAATTTCCCATTGGAGAATTATCATAAAGAACTTGAGGAAATGAAGAACATGACCAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGAGCTTCCATATACAGAGGAGTAACAAGGCACCATCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCTGGAAATAAAGATCTATATCTTGGAACATTCAGTACCCAAGAGGAAGCAGGTGAGGCCTATGACATTGCTGCTATAAAATTCCGAGGAGTTAATGCTGTTACTAATTTTGATATAACAAGATATGATGTGGAAAAAATCATGGCAAGCAATAACCTTCTTAGCAGTGAACTAGCTAGGCGTAACAAAGTGATGGATGGTGGAACTGGGAAAGAGGCAATACACCATGAACCTTTAACATGTGATGACACTCTAATAATGCAGAAGAGGTGCAAAAGCCAATCAGAGTGGGAAATGGTTCTTTATCAAAAAGAAGCAGAGGAATTGAGTAAGATGGGAAGACTAGTGTCAAATCCTTCTTCGCTGGTAACAAGTTTGAGCGGCTCAAGAGAAGAAAGTCCAGATAAGACAAGCTTGCCAGTACTCTTTGATCAAATGCCTTCAACAGCTTCTAAATTATTGGCTACTATTTCAACTAGTAATGTTGGTTCTTGGGAGCCATCTTCTCATCTCAGGCCTGCACTTTCTTTGCCTCAGATGCCAGTTTTTTCTGCTTGGACCGATGCATAA 1908 0.4151 MKPIQNVNNQNNWLGFSLTPPINIGVPPQSQPSSAAETFLPSFYHPTHVHNYGFYYGLEGENVGLYSALPIMPFKSDGSLYGIESLSRSQAQALATTSTPKLETFFRGQTMTIPQYECNTKEAMHLSLESMFYNQTFCHDPNNPNNLNHVHENISQQQLSYNSSLRNHDVMLEGSKQNQLSDSVQLPNMFEDLKNWVSRDFPGSHAQQSKMIVPVEDNGGESGSIGSMTYGELQSLSLSMSPSSQSSCVTSSQQTTPPALIDSVVALDTKKRGPEMVDLEQNQKQMVLRKSIDTFGQRTSQYRGVTRLVLPWFLTGIGGLVDMKLIYGTTAVRKRVKAGKEGKQKRKINPYTSDSKIFIVGGYDVEEKAARAYDMAALKYWGPSTHINFPLENYHKELEEMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAGEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASNNLLSSELARRNKVMDGGTGKEAIHHEPLTCDDTLIMQKRCKSQSEWEMVLYQKEAEELSKMGRLVSNPSSLVTSLSGSREESPDKTSLPVLFDQMPSTASKLLATISTSNVGSWEPSSHLRPALSLPQMPVFSAWTDA. 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00621 635 CDD AP2 425 486 IPR001471 GO:0003700|GO:0006355
Seca10g00621 635 Gene3D AP2/ERF domain 426 486 IPR036955 GO:0003700|GO:0006355
Seca10g00621 635 Gene3D AP2/ERF domain 331 392 IPR036955 GO:0003700|GO:0006355
Seca10g00621 635 ProSiteProfiles AP2/ERF domain profile. 301 390 IPR001471 GO:0003700|GO:0006355
Seca10g00621 635 SMART rav1_2 426 490 IPR001471 GO:0003700|GO:0006355
Seca10g00621 635 SMART rav1_2 332 396 IPR001471 GO:0003700|GO:0006355
Seca10g00621 635 SUPERFAMILY DNA-binding domain 425 485 IPR016177 GO:0003677
Seca10g00621 635 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 143 517 - -
Seca10g00621 635 ProSiteProfiles AP2/ERF domain profile. 426 484 IPR001471 GO:0003700|GO:0006355
Seca10g00621 635 FunFam AP2-like ethylene-responsive transcription factor 425 486 - -
Seca10g00621 635 Pfam AP2 domain 426 476 IPR001471 GO:0003700|GO:0006355
Seca10g00621 635 SUPERFAMILY DNA-binding domain 351 392 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00621 Seca-Chr10 5686652 5690168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00621 51 635 AP2-EREBP Transcription Factor Family AT4G37750 44.372 1.99e-138 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca10g00621 AP2 1.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00621 K09285 - gmx:100787611 704.516