Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00598 ATGTTTTCTTGTCTCGCTTCTCACTTACTCACGAGGAAAAGCACTAGGAAGTGTGACACATCCGTTACAAACACCCTCAAAGATCAGTATTTGAGGAGCATTCCCATCCTCACCATGCGATCACCAACAAAATTATTCAAGATGTCGCAGCTCATTTTCAACCATCCCTTACCCTTTTTACTATTATGTTTGTTGTGCTCAAGTCGAAGTAGCTTAGCGTCCATCCCGAGAGACTTTCAAATTTTGTTGCAAGTCAAGGACACCCAAATTCAAGATAAGAGCAATAGCCTAAAAGACTGGGTGCCAAACACACACCATAACCCTTGCAACTGGACTGGCATTACCTGCGATGCACGAAACAAATCAGTTGTCTCCATTGACCTCTCTGAGACTGGCATTTATGGCGAATTTCCCTTTGGTTTTTGTCATATTCAGACCCTCAAAAACCTTTTTCTTTCAGGGAATTTTCTGGGCAATTCCATCTCCTCCCAGTCTTTGATTCCCTGTTCCCGACTTCGTCTCTTGGACATCTCCGACAATTTATTCATCGGAACCTTGCCAGAATTCACACCAGAGTTTTCTGAACTAAGAATACTGGACCTCTCGCGGAACAACTTCACCGGAGATATTCCAACAAGTTTTGGTTGGTTTTCACAATTGAGGGTGCTCGTTTTGTCTGGAAACCTTCTCACTGGAACGATCCCTCCCTTTTTTGGCAACCTCAGTGAGTTAATTCGATTGGAAATTGTTAATAATCCCCTAAAACCAGGACCTTTACCTTCTCAAATTGGGAACCTTTCCAAGCTAGAAACTTTGTACCTCAGCACAATAAACCTCGTAGGGGACATACCAGAGTCCATTGGGAACCTAGTCTCGCTCAAGAACTTGGATTTGACTCATAACTCCATATCAGGCAACATCCCAAATAGCATTTCAGGCTTGAAAAGTGTGGTGAAGATTGAGCTTTATGACAACCAGCTTTCTGGTGAATTACCCCAAGGTTTAGCAAACCTCAGCAATTTGGTTATCTTGGACCTCTCTCAGAACACTCTCACAGGAAAATTGCCGGGCACGATCGCTTCATTGCATCTTTCTTCTCTCAACTTGAACGACAACTTTCTCGAGGGACAAGTCCCTGAAAGTTTAGCTTCAAACCCGAATTTGCATCAACTGAAACTCTTCAACAACAGCTTCACAGGGAAACTGCCGCAAGGTTTGGGGCAAAACACTGCGTTAGTGGATTTTGATGTCTCAACCAATAACTTCACAGGTGAGTTGCCTAAATACCTTTGCCAAAGGAGCACGCTTGAGCGTCTCATCACATTTAATAATCACTTTTCTGGAGCTCTACCTGATCAATTAGGCGAGTGCCATTCCCTCAACTATGTCAGAATCGAGAACAACCAACACTCTGGCTTGGTGCCACCCAAATTCTGGAGCCTTTCACAGCTTCAGTTTTTGCAAATGGAAAACAACAGGTTCGAAGGATCCCTCTCTGATTCCATTTCCCATGCCCGAGGAATCACCAAACTACTTTTATCCCGTAACAAATTTTCCGGCAAGTTCCCAGCGGGAATTTGTGAACTTGATCAACTTGTTGAGATTGACGTCAGCAAAAACCGATTTACCGGTGAAGTTCCCGCCTGTATAACCCGATTAAGGAAATTACTGAAGCTTGAGATGCAGGAGAACTTGTTCACTGGCGAGATTCCTGGTAACGTGAGTAATTGGACTTATTTGATCGAGTTGAACTTTTCGCATAACCGATTCTCCGGCTCAATCCCACCGAAACTTGGTAGTTTGCCAGATTTAATATACCTTGATCTCGCCGCGAATTCACTAACTGGGAAGATTCCGGTGGAGTTGACGAATCTGAAGCTCAACCAGTTCAACGTCTCTAACAACAAATTGTACGGGGAGGTTCCTTCAGGTTTCAACCATGAAGTGTACTTGTCAGGTCTAACGGGAAACCCGGGTTTGTGTAGCCCAGTTATGAAAACCTTGCGTCCTTGTTCAAGGCATAAACTCTTTTCTTTGGTTGTTATAATCATTTTAGTTGCTTGTGTTGTGCTCCTTCTAGGGTCCCTGTTGTTGTTCTTCATGAATAGAAAACCAACTATTCTTGGTGGCAAATCCAAGGGCTCTTTCATGACAACAATGTTTCAAAGAGTGGGGTTCAATGAGGAGGACGTAGTCCCATTTTTAACTAGCGAGAACATGATTGGAAGGGGGAGTTCTGGTCAGGTGTACAGGGTGAGGTTCAAGACAGGGCAGACAGTGGCAGTGAAAAAGCTCTGGGGTGGTACACAAAAACCAGATACAGAATCAGTGTTCAGGTCGGAGATTGAGACATTGGGGAGAATTAGGCATGTTAATATTGTGAAATTGTTGTTTACTTGTAGTGCTGATGACTTCAGATTATTGGTCGAAAATGAGAGAGTGCATTTCTATCCACATTGGTCAAGCTGGTATTCTGGTTGGAAATGCTTGCTGGGAGGGGCCTCCACCATGGCATTCAGTGCAGTTTTATATGATGTGCAGAAGTTGCCTGATGGCCGGATGCTTGGTGGAGGTGACGATGCTTTGAATGCTGATGTTACTGAATTCCAGACTAACCTGGTGCCATATCCAAGGATTCATTTCATGCTTTCATCCTATGCTCCCGTGATTTCAGCAGAGAAGGAATATCATGAACAGCTCTCAGTTGCAGAAATCACAAATAGCGCATTTGAGCCATCATCTATGATGGCCAAGGCATTTGTACACTGGTATGTTGGTGAGGGGATGGAAGAGGGTGAGTTCTCTGAGGCCCGTGAAGATCTTGCTGCCTTGGAGAAGGATTATGAGGAGCTGGGTGCAGAGGCTACAGAAGGTGACGAAGGCGAAAATTGCAAATACAAGACCAGGGGAGAGAGAGCTGTGAAAAAATCAGGGGTTGAAGAAAACACTAGGCTCTTCTTCGTCTCCTATAGTATATTTGCAGCTTTGCAGGTAATGGGTGTCGCTGCATTCTAG 3015 0.4428 MFSCLASHLLTRKSTRKCDTSVTNTLKDQYLRSIPILTMRSPTKLFKMSQLIFNHPLPFLLLCLLCSSRSSLASIPRDFQILLQVKDTQIQDKSNSLKDWVPNTHHNPCNWTGITCDARNKSVVSIDLSETGIYGEFPFGFCHIQTLKNLFLSGNFLGNSISSQSLIPCSRLRLLDISDNLFIGTLPEFTPEFSELRILDLSRNNFTGDIPTSFGWFSQLRVLVLSGNLLTGTIPPFFGNLSELIRLEIVNNPLKPGPLPSQIGNLSKLETLYLSTINLVGDIPESIGNLVSLKNLDLTHNSISGNIPNSISGLKSVVKIELYDNQLSGELPQGLANLSNLVILDLSQNTLTGKLPGTIASLHLSSLNLNDNFLEGQVPESLASNPNLHQLKLFNNSFTGKLPQGLGQNTALVDFDVSTNNFTGELPKYLCQRSTLERLITFNNHFSGALPDQLGECHSLNYVRIENNQHSGLVPPKFWSLSQLQFLQMENNRFEGSLSDSISHARGITKLLLSRNKFSGKFPAGICELDQLVEIDVSKNRFTGEVPACITRLRKLLKLEMQENLFTGEIPGNVSNWTYLIELNFSHNRFSGSIPPKLGSLPDLIYLDLAANSLTGKIPVELTNLKLNQFNVSNNKLYGEVPSGFNHEVYLSGLTGNPGLCSPVMKTLRPCSRHKLFSLVVIIILVACVVLLLGSLLLFFMNRKPTILGGKSKGSFMTTMFQRVGFNEEDVVPFLTSENMIGRGSSGQVYRVRFKTGQTVAVKKLWGGTQKPDTESVFRSEIETLGRIRHVNIVKLLFTCSADDFRLLVENERVHFYPHWSSWYSGWKCLLGGASTMAFSAVLYDVQKLPDGRMLGGGDDALNADVTEFQTNLVPYPRIHFMLSSYAPVISAEKEYHEQLSVAEITNSAFEPSSMMAKAFVHWYVGEGMEEGEFSEAREDLAALEKDYEELGAEATEGDEGENCKYKTRGERAVKKSGVEENTRLFFVSYSIFAALQVMGVAAF. 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00598 1004 Coils Coil 934 954 - -
Seca10g00598 1004 FunFam Leucine-rich receptor-like protein kinase family protein 259 357 - -
Seca10g00598 1004 Gene3D Ribonuclease Inhibitor 75 255 IPR032675 -
Seca10g00598 1004 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 364 809 - -
Seca10g00598 1004 SUPERFAMILY L domain-like 362 684 - -
Seca10g00598 1004 Gene3D Phosphorylase Kinase; domain 1 729 811 - -
Seca10g00598 1004 Pfam Leucine rich repeat 268 327 IPR001611 GO:0005515
Seca10g00598 1004 Pfam Leucine rich repeat 195 254 IPR001611 GO:0005515
Seca10g00598 1004 SUPERFAMILY RNI-like 119 432 - -
Seca10g00598 1004 Pfam Protein kinase domain 737 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00598 1004 ProSiteProfiles Protein kinase domain profile. 735 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g00598 1004 FunFam Leucine-rich repeat receptor-like protein kinase TDR 359 673 - -
Seca10g00598 1004 Gene3D Ribonuclease Inhibitor 361 672 IPR032675 -
Seca10g00598 1004 Gene3D Helix hairpin bin 919 951 IPR023123 -
Seca10g00598 1004 Gene3D Ribonuclease Inhibitor 256 360 IPR032675 -
Seca10g00598 1004 SMART Tubulin_C_4 862 967 IPR018316 -
Seca10g00598 1004 FunFam Tubulin alpha chain 880 923 - -
Seca10g00598 1004 SUPERFAMILY Protein kinase-like (PK-like) 735 809 IPR011009 -
Seca10g00598 1004 SUPERFAMILY Tubulin C-terminal domain-like 863 951 IPR008280 -
Seca10g00598 1004 Gene3D - 876 918 IPR037103 -
Seca10g00598 1004 Pfam Leucine rich repeat N-terminal domain 77 117 IPR013210 -
Seca10g00598 1004 Pfam Tubulin C-terminal domain 877 919 IPR018316 -
Seca10g00598 1004 ProSitePatterns Protein kinases ATP-binding region signature. 741 764 IPR017441 GO:0005524
Seca10g00598 1004 FunFam Leucine-rich repeat receptor-like protein kinase 76 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00598 Seca-Chr10 5445612 5455998 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00598 78 839 Receptor kinase-like Gene Family AT5G65710 50.385 0.0 760
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca10g00598 Pkinase 4e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00598 - - gmx:100813889 1036.56