Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00592 ATGATATCAACGGAGGAGTCATGGACAAGTTGGTTGTGTGATTTGGAAGCAGAGGATTACAATTTCATCAATCAATCCGAGACCGAAGGAAGTTTCCCTGCGCCACAAGAACAGAACTTGCAACGATCTTTCTCTACTGATAGCTACCGCTCGTACGCCACTTCCACTACTTCCACCTTCAAAACCGAAAACTCCAGCACCATGAGCAATTCCTCCTCAGGGGATGTTAACAGCTTCCAGAGGGAGAGGCCTTCCAAGACACTCAAGACCGGGCCTTCAAATTCTCCTAACACTGGCAGCTACATTCTTTCGTTTAACAATGAGAATCCAGCACCAGCACCAATATTGAGCATGGATTCGAGCTTAAAGCCAAAAGGGAAGGTTGTGAATCATGGGAGATCTCTGCCCTCAAAGGAAAATCAAAAGAAGGAACCTAGACGCAATGTTCAGGAGGGAGAGAAGACCAGATCTCCTCACCATGCTCAAGATCACATTATTGCTGAGAGAAAGAGGAGACAAAAGATTAGCCAGCAGTTCATAGCTCTTTCAGCCCTTATTCCAGGCCTAAAAAAGATGGACAAGGCCTCTGTTTTGGGGGACGCAATAAAGCACGTGAAAGAGCTCCAAGAGCAAGTGAAGGTACTGGAAGAGAAGGCTAAAAGGAAAAGCGCTGATTCGGTGGTATATGTTGAGAAATCCAAGTCCTCTGTAGACGAAGATGTCTCACTCTCAGACACCTCATCAAATTATGGCAACGGAAACTCCTATGATGACCCCTCAAAAACAAATCGATCACTGCCAGAAGTTGAAGCAAGGGTGTCGGATAAAAACGTCCTCATCCGAATCCACTGTGACAAACACAAGGGAGTGTTGATGAACATATTCAAAGAGATACAGAACCTTCATCTATCAGTGATCAATAGCAGTGCCTTGCTTTTCGGGACCTCCAAACTCGACATAACCATCATAGCCGAGGTCCGGAGGGAGTACTTCATTATGAACCCCTTTGTACATAACTTAAAAGATGGATGA 1032 0.4525 MISTEESWTSWLCDLEAEDYNFINQSETEGSFPAPQEQNLQRSFSTDSYRSYATSTTSTFKTENSSTMSNSSSGDVNSFQRERPSKTLKTGPSNSPNTGSYILSFNNENPAPAPILSMDSSLKPKGKVVNHGRSLPSKENQKKEPRRNVQEGEKTRSPHHAQDHIIAERKRRQKISQQFIALSALIPGLKKMDKASVLGDAIKHVKELQEQVKVLEEKAKRKSADSVVYVEKSKSSVDEDVSLSDTSSNYGNGNSYDDPSKTNRSLPEVEARVSDKNVLIRIHCDKHKGVLMNIFKEIQNLHLSVINSSALLFGTSKLDITIIAEVRREYFIMNPFVHNLKDG. 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00592 343 Coils Coil 198 225 - -
Seca10g00592 343 SMART finulus 165 214 IPR011598 GO:0046983
Seca10g00592 343 MobiDBLite consensus disorder prediction 136 164 - -
Seca10g00592 343 PANTHER BHLH TRANSCRIPTION FACTOR 35 340 - -
Seca10g00592 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Seca10g00592 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 222 IPR036638 GO:0046983
Seca10g00592 343 Gene3D - 158 228 IPR036638 GO:0046983
Seca10g00592 343 MobiDBLite consensus disorder prediction 24 164 - -
Seca10g00592 343 Pfam Helix-loop-helix DNA-binding domain 163 209 IPR011598 GO:0046983
Seca10g00592 343 MobiDBLite consensus disorder prediction 24 114 - -
Seca10g00592 343 CDD bHLH_AtNAI1_like 159 233 - -
Seca10g00592 343 MobiDBLite consensus disorder prediction 240 262 - -
Seca10g00592 343 MobiDBLite consensus disorder prediction 240 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00592 Seca-Chr10 5383556 5387647 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00592 155 324 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 53.529 8.93e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca10g00592 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00592 - - tpra:123911002 342.428