Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00590 ATGGAGCAATTAAACACACAAAGGGAGGCATCATCACCCAGCTGGTTATCTGATTTGCTGTTGCAGGAAATGGAGGAGGATGATTGCAATTTGCTTCAACAATGCCACCCCAACTTGCTTGGTGATGAAGAGTTACTTTCTCTTGACATCGCAAGTGCCCTTCACCAACCTTTGTCTTCCGAGAGCTACACTTCTTATCCTCCTGCCTACACTTCCACAGATGAAACCAGACCTCGCAAGCACCACAAAACCCAACATCTTTCCCCTTCTCCATCCCCCTCTGACTCCCCCACCTCCCATCTTCTCTCTTTTGACAACTCAAACTTTTATGGGCTTAACTTTGAGCTTAACCCAAAACATAACGAGGTCGTTTCAGTCTCACCTCCGCCAAATGTGCCTCAAACCCAAAAGGACTCATCACAAGACCAAAACTTTGAAAGTATAATTAATCCACAAGACCAACAAGGGACCAAGAGATCTCCTGCTCACACTCAAGACCACATCATAGCCGAGAGAAAGCGAAGAGAGAAGCTCAGCCAGAGCTTAATTGCTCTTGCAGCTCTTATTCCCGGCTTAAAGAAGATGGACAAGGCTTCAGTTCTAGGAGACGCTATCAAGTACGTGAAAGAGCTCCAAGAGCGTTTGAGGTTACTGGAAGAGCAGAGCAAGAACAGAGAGGTAGCGTCTGTGGTGATGATCAATAAACCAACGCTCATCAGCTGCGACGATCATTCATCCGATGATGGTGGTAATGGGGATGAACCACCGCTCCCCCATGTGGAAGCAAGAGTGTCAGAGAAGGACGTGCTCCTTCGCATCCACTGCCAAAACCAAAAGGGTCTTTTACTCAAAATACTTGCCGAGGTTCAAAACCTTCATCTCTTTGTTGTCAATAGCAGTGTCCTACGCTTTGGGGACGCTATCCTTGACATAACCATTGTTGCTCAGATGGGCACAGGCTACAACTTGACCATAAACGATCTTGTAAAAAACTTACGCGTGGCTACATTGAGATCCATGTCATGA 1026 0.4659 MEQLNTQREASSPSWLSDLLLQEMEEDDCNLLQQCHPNLLGDEELLSLDIASALHQPLSSESYTSYPPAYTSTDETRPRKHHKTQHLSPSPSPSDSPTSHLLSFDNSNFYGLNFELNPKHNEVVSVSPPPNVPQTQKDSSQDQNFESIINPQDQQGTKRSPAHTQDHIIAERKRREKLSQSLIALAALIPGLKKMDKASVLGDAIKYVKELQERLRLLEEQSKNREVASVVMINKPTLISCDDHSSDDGGNGDEPPLPHVEARVSEKDVLLRIHCQNQKGLLLKILAEVQNLHLFVVNSSVLRFGDAILDITIVAQMGTGYNLTINDLVKNLRVATLRSMS. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00590 341 Coils Coil 201 228 - -
Seca10g00590 341 MobiDBLite consensus disorder prediction 87 102 - -
Seca10g00590 341 SMART finulus 168 217 IPR011598 GO:0046983
Seca10g00590 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 223 IPR036638 GO:0046983
Seca10g00590 341 MobiDBLite consensus disorder prediction 60 102 - -
Seca10g00590 341 CDD bHLH_AtNAI1_like 163 235 - -
Seca10g00590 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Seca10g00590 341 MobiDBLite consensus disorder prediction 121 143 - -
Seca10g00590 341 Pfam Helix-loop-helix DNA-binding domain 166 212 IPR011598 GO:0046983
Seca10g00590 341 Gene3D - 152 213 IPR036638 GO:0046983
Seca10g00590 341 MobiDBLite consensus disorder prediction 240 259 - -
Seca10g00590 341 PANTHER BHLH TRANSCRIPTION FACTOR 14 337 - -
Seca10g00590 341 MobiDBLite consensus disorder prediction 127 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00590 Seca-Chr10 5374605 5376266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00590 12 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.116 2.09e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca10g00590 HLH 2.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00590 - - gmx:100816551 352.058