Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00585 ATGGCTACAGAGATTGGCCTTGTGTCCATGACCCAGATCCAAAAATTACCACAATCCCAACACCACCAAAATCAACCCCAAACAAACCCTAACTCCACCACCACCACTACCACTGGTGTCTCCTCCTCACCGACTTGGATGTGGAACCCTAGGGAGCAACAGCAGCAAGAGGAAGAAGAGGAAGAGTCATGGGAGGTGAGAGCTTTTGCAGAAGACACAAGGAACATAATGGGAACAACATGGCCTCCAAGGTCCTACACCTGCACCTTCTGCAGAAGGGAGTTCAGGTCAGCCCAAGCTCTAGGTGGCCACATGAACGTTCACCGCCGTGACCGTGCTCGCCTCCACCAACCTCACCCTCACCCTCCTACTGCCTCATTCATAAATATCCCATCTCAAGAGCTTGTTGCAAATGCAGGATTGTGCCTCCTCTATCATTTGCCCAGCCCTAATGCTTCTTCTTCTGCCTTCACTAGTCCTTCCTTGAACAATGCAAATGGAGAATCTCCCTCCACTCTTCTCTCCATCTCATCCTCCTATTCACCAAACAACTTGATGATGCAATCCTTTAATTTGCAAGCTGCAGCACCACCACCTTACTTTACCAAAGTGGAACAACCACAACCCACAACCTCTACCTCCATAAATAACAATGGCCACCTTGAAGAGCTTGATCTAGAACTCCGCCTTGGCCACAAGCCTACACTAAATAGTACTTAG 720 0.4903 MATEIGLVSMTQIQKLPQSQHHQNQPQTNPNSTTTTTTGVSSSPTWMWNPREQQQQEEEEEESWEVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQPHPHPPTASFINIPSQELVANAGLCLLYHLPSPNASSSAFTSPSLNNANGESPSTLLSISSSYSPNNLMMQSFNLQAAAPPPYFTKVEQPQPTTSTSINNNGHLEELDLELRLGHKPTLNST. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00585 239 PANTHER OS07G0101800 PROTEIN 58 234 - -
Seca10g00585 239 MobiDBLite consensus disorder prediction 14 63 - -
Seca10g00585 239 MobiDBLite consensus disorder prediction 14 52 - -
Seca10g00585 239 Pfam C2H2-type zinc finger 86 110 - -
Seca10g00585 239 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Seca10g00585 239 SUPERFAMILY beta-beta-alpha zinc fingers 83 113 IPR036236 -
Seca10g00585 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Seca10g00585 239 SMART c2h2final6 86 108 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00585 Seca-Chr10 5332028 5332747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00585 46 234 C2H2 Transcription Factor Family AT4G17810 43.229 2.15e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca10g00585 zf-C2H2_6 5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00585 - - gmx:100818142 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00585 10 5332028 5332747 Seca10g00585 10 5332028 5332747 ECH
Seca10g00585 10 5332028 5332747 Seca10g00585 10 5332028 5332747 PCT