Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00584 ATGGCTGGTTTGGATTTAGGAACAGCTTCACACTTCGTTCACCAGAGTCTCCACAGACCAGAGTTCAACCTTCAACACCAACAACAACCCGAATCCGAAGAGGAACCCAACCACTCTGACCCTTTTTCCAACGAAGATGGTCCCCGCCAGGGCCTCGACCTCGCCTCCGTCGGTCCCGGCGACGTGGTTGGCCGTCGACCACGAGGAAGACCGCCGGGATCGAAGAACAAACCCAAGCCGCCGGTGATCATAACCAGGGAGAGCGCCAACACGCTTCGTGCTCATATCCTCGAAGTCGGCAACGGCTGCGACGTCTTCGACTGCGTCGCCACCTACGCGCGCCGCCGCCAGCGCGGGATCTGTATTCTCAGCGGCAGCGGAACCGTCACCAATGTTAGCCTGCGGCAGCCAGCTTCTGCAGGAGCGGTGGTTTCCCTTCACGGAAGGTTCGAGATACTGTCACTGTCAGGGTCTTTTCTGCCACCGCCGGCTCCGCCGGGAGCCACCAGTTTGACGATATACCTGGCGGGAGGGCAAGGACAAGTGGTGGGAGGGAGTGTGGTGGGAGAGTTGACCGCAGCTGGACCGGTGATTGTGATCGCTTCTTCGTTCACAAACGTGGCTTATGAGCGGTTACCTTTGGAGGAAGATGAACAGCAGGTTCAGAATGTTCAAGGTTCAAGTGGTGGTGTGGGGAACAATCCATTTCCAGACCCATCTTCGGGTCTTCCGTTCTTCAATTTGCCGTTGAATATGCAGAATGTTCAGTTACCTGTGGATGGTTGGGCGGGAAACTCAGCTGCACGTTCGTCATTTTGA 819 0.5678 MAGLDLGTASHFVHQSLHRPEFNLQHQQQPESEEEPNHSDPFSNEDGPRQGLDLASVGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGNGCDVFDCVATYARRRQRGICILSGSGTVTNVSLRQPASAGAVVSLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELTAAGPVIVIASSFTNVAYERLPLEEDEQQVQNVQGSSGGVGNNPFPDPSSGLPFFNLPLNMQNVQLPVDGWAGNSAARSSF. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00584 272 MobiDBLite consensus disorder prediction 15 83 - -
Seca10g00584 272 CDD DUF296 93 176 IPR005175 -
Seca10g00584 272 ProSiteProfiles PPC domain profile profile. 89 225 IPR005175 -
Seca10g00584 272 SUPERFAMILY AF0104/ALDC/Ptd012-like 89 222 - -
Seca10g00584 272 FunFam AT-hook motif nuclear-localized protein 92 219 - -
Seca10g00584 272 Pfam Plants and Prokaryotes Conserved (PCC) domain 93 206 IPR005175 -
Seca10g00584 272 Gene3D - 92 225 - -
Seca10g00584 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 31 232 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00584 Seca-Chr10 5293809 5294627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g00584 1 272 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 70.408 8.85e-106 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00584 - - jre:108994023 377.096